HL_4U67_008

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_008 not in the Motif Atlas

Homologous match to HL_7A0S_008

Geometric discrepancy: 0.0879

The information below is about HL_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

4U67|1|X|C|223
4U67|1|X|G|224
4U67|1|X|G|225
4U67|1|X|C|226
4U67|1|X|G|227
4U67|1|X|A|228
4U67|1|X|G|229

Current chains

Chain X

23s RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28