HL_4U67_009

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4U67|1|X|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1198

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

4U67|1|X|C|316
4U67|1|X|U|317
4U67|1|X|G|318
4U67|1|X|G|319
4U67|1|X|A|320
4U67|1|X|A|321
4U67|1|X|A|322
4U67|1|X|G|323

Current chains

Chain X

23s RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24