HL_4U67_016

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

4U67|1|X|U|554, 4U67|1|X|U|555, 4U67|1|X|A|556, 4U67|1|X|C|559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_016 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.3754

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U67|1|X|C|552
4U67|1|X|C|553
4U67|1|X|U|554
4U67|1|X|U|555
4U67|1|X|A|556
4U67|1|X|U|557
4U67|1|X|G|558
4U67|1|X|C|559
4U67|1|X|G|560

Current chains

Chain X

23s RNA

Nearby chains

Chain O

50S ribosomal protein L21