HL_4U67_030

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

UCGCCGA

Length

7 nucleotides

Bulged bases

4U67|1|X|C|1185

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_030 not in the Motif Atlas

Homologous match to HL_5J7L_213

Geometric discrepancy: 0.5864

The information below is about HL_5J7L_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90774.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4U67|1|X|U|1182
4U67|1|X|C|1183
4U67|1|X|G|1184
4U67|1|X|C|1185
4U67|1|X|C|1190
4U67|1|X|G|1191
4U67|1|X|A|1192

Current chains

Chain X

23s RNA

Nearby chains

Chain I

50S ribosomal protein L15