Motif HL_90774.1 Version HL_90774.1 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_213 | 5J7L | 0.5719 | 5 | DA | LSU rRNA | C | 1170 | G | 1171 | G | 1177 | C | 1178 | G | 1179 | cWW | ncWW |
| 2 | HL_3OIN_001 | 3OIN | 0.0000 | 3 | C | RNA (14-mer) | C | 4 | U | 5 | A | 9 | C | 10 | G | 11 | cWW | |
| 3 | HL_5VOE_001 | 5VOE | 0.7434 | 3 | A | Aptamer 11F7t (36-MER) | G | 15 | A | 16 | A | 19 | UFT | 20 | CFL | 22 | cWW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCUUAUGCG | 1 |
| CUUCAACG | 1 |
| GA(UFT)AA(UFT)A(CFL) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCUUAUGC | 1 |
| UUCAAC | 1 |
| A(UFT)AA(UFT)A | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.57 | Avg 0.51 | Max 0.98
Coloring options: