HL_4U67_032

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_032 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.112

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

4U67|1|X|G|1294
4U67|1|X|U|1295
4U67|1|X|G|1296
4U67|1|X|A|1297
4U67|1|X|G|1298
4U67|1|X|A|1299
4U67|1|X|A|1300
4U67|1|X|U|1301
4U67|1|X|C|1302

Current chains

Chain X

23s RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22