HL_4U67_045

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GUUUACCAAAAUC

Length

13 nucleotides

Bulged bases

4U67|1|X|A|1771, 4U67|1|X|C|1772, 4U67|1|X|C|1773, 4U67|1|X|A|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.1365

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4U67|1|X|G|1767
4U67|1|X|U|1768
4U67|1|X|U|1769
4U67|1|X|U|1770
4U67|1|X|A|1771
4U67|1|X|C|1772
4U67|1|X|C|1773
4U67|1|X|A|1774
4U67|1|X|A|1775
4U67|1|X|A|1776
4U67|1|X|A|1777
4U67|1|X|U|1778
4U67|1|X|C|1779

Current chains

Chain X

23s RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2