HL_4U67_053

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

4U67|1|X|A|2247, 4U67|1|X|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_053 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.1028

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4U67|1|X|C|2243
4U67|1|X|C|2244
4U67|1|X|A|2245
4U67|1|X|A|2246
4U67|1|X|A|2247
4U67|1|X|A|2248
4U67|1|X|U|2249
4U67|1|X|G|2250
4U67|1|X|U|2251
4U67|1|X|A|2252
4U67|1|X|A|2253
4U67|1|X|C|2254
4U67|1|X|G|2255

Current chains

Chain X

23s RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27