HL_4U67_055

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_055 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.1278

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4U67|1|X|C|2303
4U67|1|X|G|2304
4U67|1|X|C|2305
4U67|1|X|A|2306
4U67|1|X|A|2307
4U67|1|X|A|2308
4U67|1|X|G|2309
4U67|1|X|G|2310

Current chains

Chain X

23s RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27