HL_4UG0_010

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_010 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.0901

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UG0|1|L5|C|368
4UG0|1|L5|G|369
4UG0|1|L5|U|370
4UG0|1|L5|A|371
4UG0|1|L5|A|372
4UG0|1|L5|G|373

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S RIBOSOMAL PROTEIN L4

Chain Lj

60S RIBOSOMAL PROTEIN L37

Chain Ll

60S RIBOSOMAL PROTEIN L39