4UG0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4UG0_001 | 1/L5/37:44 | No text annotation | geometric HL_5TBW_001 NA | |
| HL_4UG0_002 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_4UG0_003 | 1/L5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_4UG0_005 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_4UG0_006 | 1/L5/222:226 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_4UG0_007 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_4UG0_008 | 1/L5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_4UG0_009 | 1/L5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_4UG0_010 | 1/L5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_4UG0_011 | 1/L5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_4UG0_017 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_4UG0_018 | 1/L5/1363:1374 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4UG0_019 | 1/L5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_4UG0_020 | 1/L5/1435:1449 | No text annotation | ||
| HL_4UG0_021 | 1/L5/1479:1486 | No text annotation | ||
| HL_4UG0_022 | 1/L5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
| HL_4UG0_023 | 1/L5/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_4UG0_024 | 1/L5/1627:1635 | No text annotation | homologous HL_5TBW_021 NA | |
| HL_4UG0_025 | 1/L5/1675:1680 | Externally structured | homologous HL_5TBW_022 NA | |
| HL_4UG0_117 | 1/L5/1749:1781 | No text annotation | ||
| HL_4UG0_028 | 1/L5/1864:1870 | GNRA | homologous HL_8C3A_025 NA | |
| HL_4UG0_029 | 1/L5/1886:1893 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_4UG0_032 | 1/L5/2317:2322 | GNRA | homologous HL_5TBW_030 NA | |
| HL_4UG0_033 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_4UG0_034 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_4UG0_035 | 1/L5/2458:2463 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_4UG0_131 | 1/L5/2482:2496 | No text annotation | ||
| HL_4UG0_037 | 1/L5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_4UG0_039 | 1/L5/2578:2583 | GNRA | homologous HL_5TBW_036 NA | |
| HL_4UG0_119 | 1/L5/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_4UG0_041 | 1/L5/2664:2670 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_4UG0_132 | 1/L5/2704:2712 | No text annotation | ||
| HL_4UG0_043 | 1/L5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_4UG0_044 | 1/L5/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_4UG0_045 | 1/L5/2810:2816 | GNRA | homologous HL_8C3A_042 NA | |
| HL_4UG0_046 | 1/L5/2872:2877 | UNCG | homologous HL_8C3A_043 NA | |
| HL_4UG0_048 | 1/L5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_4UG0_049 | 1/L5/3639:3649 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_4UG0_050 | 1/L5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_4UG0_051 | 1/L5/3724:3729 | GNRA | homologous HL_5TBW_048 NA | |
| HL_4UG0_133 | 1/L5/3755:3769 | No text annotation | ||
| HL_4UG0_134 | 1/L5/3796:3804 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_4UG0_054 | 1/L5/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_4UG0_135 | 1/L5/3945:4068 | No text annotation | ||
| HL_4UG0_136 | 1/L5/4137:4147 | No text annotation | ||
| HL_4UG0_057 | 1/L5/4193:4201 | No text annotation | homologous HL_5TBW_054 NA | |
| HL_4UG0_058 | 1/L5/4210:4222 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_4UG0_122 | 1/L5/4250:4258 | No text annotation | homologous HL_8P9A_167 HL_02452.1 | |
| HL_4UG0_060 | 1/L5/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_4UG0_061 | 1/L5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_4UG0_062 | 1/L5/4321:4326 | GNRA | homologous HL_5TBW_059 NA | |
| HL_4UG0_063 | 1/L5/4352:4362 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_4UG0_064 | 1/L5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_4UG0_137 | 1/L5/4474:4481 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
| HL_4UG0_124 | 1/L5/4495:4505 | No text annotation | ||
| HL_4UG0_066 | 1/L5/4497:4503 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_4UG0_067 | 1/L5/4540:4545 | GNRA | homologous HL_5TBW_064 NA | |
| HL_4UG0_068 | 1/L5/4603:4608 | GNRA | geometric HL_5D5L_001 HL_34789.2 | |
| HL_4UG0_125 | 1/L5/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_4UG0_070 | 1/L5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_4UG0_072 | 1/L5/4907:4914 | No text annotation | geometric HL_1WZ2_007 HL_75660.7 | |
| HL_4UG0_073 | 1/L5/4975:4983 | No text annotation | geometric HL_5J7L_201 NA | |
| HL_4UG0_074 | 1/L5/5021:5028 | No text annotation | ||
| HL_4UG0_075 | 1/L7/36:41 | No text annotation | homologous HL_5TBW_185 NA | |
| HL_4UG0_076 | 1/L7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_4UG0_077 | 1/L8/47:56 | Pseudoknot with intercalation | geometric HL_4V9F_001 HL_17803.1 | |
| HL_4UG0_078 | 1/L8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_4UG0_079 | 1/L8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_4UG0_080 | 1/L8/121:129 | No text annotation | ||
| HL_4UG0_081 | 1/S2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_4UG0_082 | 1/S2/69:80 | No text annotation | geometric HL_5TBW_012 NA | |
| HL_4UG0_126 | 1/S2/145:174 | No text annotation | ||
| HL_4UG0_083 | 1/S2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_4UG0_084 | 1/S2/195:204 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_4UG0_085 | 1/S2/288:295 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_4UG0_086 | 1/S2/321:330 | No text annotation | ||
| HL_4UG0_087 | 1/S2/377:387 | No text annotation | ||
| HL_4UG0_088 | 1/S2/416:421 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_4UG0_089 | 1/S2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_4UG0_090 | 1/S2/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_4UG0_091 | 1/S2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_4UG0_093 | 1/S2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_4UG0_094 | 1/S2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_4UG0_095 | 1/S2/833:841 | No text annotation | ||
| HL_4UG0_096 | 1/S2/873:912 | No text annotation | ||
| HL_4UG0_129 | 1/S2/952:974 | No text annotation | ||
| HL_4UG0_097 | 1/S2/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_4UG0_098 | 1/S2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_4UG0_138 | 1/S2/1054:1064 | No text annotation | homologous HL_8CRE_212 HL_38491.2 | |
| HL_4UG0_100 | 1/S2/1112:1121 | No text annotation | ||
| HL_4UG0_101 | 1/S2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_4UG0_102 | 1/S2/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_4UG0_103 | 1/S2/1245:1254 | No text annotation | homologous HL_4V88_212 NA | |
| HL_4UG0_104 | 1/S2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_4UG0_105 | 1/S2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_4UG0_130 | 1/S2/1395:1450 | No text annotation | ||
| HL_4UG0_106 | 1/S2/1411:1434 | No text annotation | ||
| HL_4UG0_107 | 1/S2/1460:1466 | GNRA | homologous HL_4V88_217 NA | |
| HL_4UG0_109 | 1/S2/1614:1625 | No text annotation | homologous HL_4V88_219 NA | |
| HL_4UG0_110 | 1/S2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_4UG0_112 | 1/S2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA | |
| HL_4UG0_113 | 1/S6/12:24 | No text annotation | homologous HL_4V9I_038 NA | |
| HL_4UG0_115 | 1/S6/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_33597.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4UG0_004 | No text annotation | ||
| HL_4UG0_012 | No text annotation | ||
| HL_4UG0_013 | No text annotation | ||
| HL_4UG0_014 | No text annotation | ||
| HL_4UG0_116 | No text annotation | ||
| HL_4UG0_015 | No text annotation | ||
| HL_4UG0_016 | Mini UNCG | ||
| HL_4UG0_026 | No text annotation | ||
| HL_4UG0_027 | No text annotation | ||
| HL_4UG0_030 | No text annotation | ||
| HL_4UG0_118 | No text annotation | ||
| HL_4UG0_031 | No text annotation | ||
| HL_4UG0_036 | No text annotation | ||
| HL_4UG0_038 | No text annotation | ||
| HL_4UG0_040 | tRNA D-loop | ||
| HL_4UG0_120 | No text annotation | ||
| HL_4UG0_042 | No text annotation | ||
| HL_4UG0_047 | No text annotation | ||
| HL_4UG0_052 | No text annotation | ||
| HL_4UG0_053 | No text annotation | ||
| HL_4UG0_121 | No text annotation | ||
| HL_4UG0_055 | No text annotation | ||
| HL_4UG0_056 | No text annotation | ||
| HL_4UG0_059 | No text annotation | ||
| HL_4UG0_123 | No text annotation | ||
| HL_4UG0_065 | No text annotation | ||
| HL_4UG0_069 | No text annotation | ||
| HL_4UG0_071 | No text annotation | ||
| HL_4UG0_127 | No text annotation | ||
| HL_4UG0_092 | No text annotation | ||
| HL_4UG0_128 | No text annotation | ||
| HL_4UG0_099 | tRNA D-loop | ||
| HL_4UG0_108 | GNRA | ||
| HL_4UG0_111 | No text annotation | ||
| HL_4UG0_114 | No text annotation | ||
| HL_4UG0_139 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4UG0_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_4UG0_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_4UG0_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
| IL_4UG0_004 | 1/L5/26:27, 1/L5/55:57 | Single stack bend | homologous IL_5TBW_004 NA | |
| IL_4UG0_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_4UG0_006 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_006 NA | |
| IL_4UG0_007 | 1/L5/118:121, 1/L5/152:153 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_4UG0_223 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_4UG0_008 | 1/L5/121:122, 1/L5/147:152 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_4UG0_009 | 1/L5/125:128, 1/L5/140:144 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_15225.2 | |
| IL_4UG0_224 | 1/L5/164:175, 1/L5/262:271 | No text annotation | ||
| IL_4UG0_225 | 1/L5/175:189, 1/L5/252:262 | No text annotation | ||
| IL_4UG0_011 | 1/L5/177:189, 1/L5/252:259 | No text annotation | ||
| IL_4UG0_012 | 1/L5/195:196, 1/L5/244:246 | No text annotation | ||
| IL_4UG0_013 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_4UG0_014 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_4UG0_015 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_4UG0_016 | 1/L5/387:390, 1/L5/401:414 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_4UG0_017 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_4UG0_018 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_4UG0_019 | 1/L5/459:462, 1/L5/693:697 | Tandem non-canonical cWW pairs | homologous IL_8C3A_018 NA | |
| IL_4UG0_269 | 1/L5/459:473, 1/L5/681:697 | No text annotation | ||
| IL_4UG0_271 | 1/L5/488:494, 1/L5/660:668 | No text annotation | ||
| IL_4UG0_025 | 1/L5/505:510, 1/L5/649:653 | Triple non-canonical cWW pairs | geometric IL_8VM9_004 IL_71154.2 | |
| IL_4UG0_026 | 1/L5/708:709, 1/L5/1287:1289 | No text annotation | ||
| IL_4UG0_272 | 1/L5/722:724, 1/L5/942:946 | No text annotation | ||
| IL_4UG0_028 | 1/L5/726:731, 1/L5/938:940 | No text annotation | ||
| IL_4UG0_229 | 1/L5/726:742, 1/L5/922:940 | No text annotation | ||
| IL_4UG0_029 | 1/L5/731:735, 1/L5/928:938 | No text annotation | ||
| IL_4UG0_030 | 1/L5/735:737, 1/L5/927:928 | No text annotation | ||
| IL_4UG0_031 | 1/L5/740:742, 1/L5/922:924 | No text annotation | geometric IL_4KR9_002 NA | |
| IL_4UG0_032 | 1/L5/744:752, 1/L5/911:920 | No text annotation | ||
| IL_4UG0_231 | 1/L5/978:980, 1/L5/1274:1276 | Isolated non-canonical cWW pair | geometric IL_7ECO_006 IL_01003.2 | |
| IL_4UG0_035 | 1/L5/1080:1082, 1/L5/1217:1220 | No text annotation | ||
| IL_4UG0_232 | 1/L5/1080:1085, 1/L5/1212:1220 | No text annotation | ||
| IL_4UG0_036 | 1/L5/1082:1085, 1/L5/1212:1217 | No text annotation | ||
| IL_4UG0_233 | 1/L5/1086:1087, 1/L5/1209:1211 | No text annotation | ||
| IL_4UG0_273 | 1/L5/1093:1098, 1/L5/1197:1203 | No text annotation | ||
| IL_4UG0_038 | 1/L5/1095:1098, 1/L5/1197:1201 | No text annotation | ||
| IL_4UG0_039 | 1/L5/1357:1360, 1/L5/1378:1382 | No text annotation | ||
| IL_4UG0_040 | 1/L5/1360:1361, 1/L5/1376:1378 | No text annotation | ||
| IL_4UG0_041 | 1/L5/1425:1429, 1/L5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_4UG0_042 | 1/L5/1430:1434, 1/L5/1450:1454 | Double sheared with near cWW | geometric IL_7A0S_056 IL_87767.2 | |
| IL_4UG0_043 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_5TBW_024 NA | |
| IL_4UG0_044 | 1/L5/1474:1476, 1/L5/1489:1490 | No text annotation | ||
| IL_4UG0_235 | 1/L5/1474:1477, 1/L5/1488:1490 | Other IL | geometric IL_5TBW_064 NA | |
| IL_4UG0_045 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_4UG0_046 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_4UG0_047 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_4UG0_048 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared | geometric IL_5J7L_263 NA | |
| IL_4UG0_049 | 1/L5/1586:1589, 1/L5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_4UG0_050 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_4UG0_051 | 1/L5/1624:1626, 1/L5/1636:1640 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_4UG0_236 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_4UG0_052 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_4UG0_054 | 1/L5/1732:1737, 1/L5/1792:1797 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
| IL_4UG0_055 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_4UG0_056 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop | homologous IL_5TBW_040 NA | |
| IL_4UG0_057 | 1/L5/1745:1749, 1/L5/1781:1785 | No text annotation | homologous IL_8C3A_044 NA | |
| IL_4UG0_058 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_5TBW_046 NA | |
| IL_4UG0_059 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_5TBW_048 NA | |
| IL_4UG0_060 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4UG0_061 | 1/L5/1918:1920, 1/L5/2063:2064 | No text annotation | ||
| IL_4UG0_238 | 1/L5/1918:1922, 1/L5/2062:2064 | Isolated non-canonical cWW pair | geometric IL_6M6R_001 IL_01003.2 | |
| IL_4UG0_062 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | geometric IL_8CRE_390 IL_05642.2 | |
| IL_4UG0_063 | 1/L5/1926:1944, 1/L5/2038:2058 | No text annotation | ||
| IL_4UG0_064 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_4UG0_065 | 1/L5/1956:1967, 1/L5/2020:2027 | No text annotation | ||
| IL_4UG0_240 | 1/L5/1967:2006, 1/L5/2013:2020 | No text annotation | ||
| IL_4UG0_066 | 1/L5/2083:2085, 1/L5/2272:2273 | No text annotation | ||
| IL_4UG0_067 | 1/L5/2290:2292, 1/L5/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_4UG0_068 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_4UG0_069 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_4UG0_070 | 1/L5/2311:2314, 1/L5/2325:2327 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_4UG0_071 | 1/L5/2358:2364, 1/L5/3858:3863 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_4UG0_072 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop | geometric IL_7A0S_047 IL_06671.1 | |
| IL_4UG0_073 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_4UG0_074 | 1/L5/2477:2479, 1/L5/2499:2500 | Single stack bend | geometric IL_4LFB_041 IL_15011.2 | |
| IL_4UG0_075 | 1/L5/2542:2547, 1/L5/2772:2774 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_4UG0_241 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared | homologous IL_8P9A_295 IL_15190.2 | |
| IL_4UG0_077 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_4UG0_078 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | geometric IL_4C7O_002 IL_15011.2 | |
| IL_4UG0_079 | 1/L5/2646:2648, 1/L5/2685:2688 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
| IL_4UG0_080 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | geometric IL_6TFF_002 IL_28408.2 | |
| IL_4UG0_081 | 1/L5/2656:2662, 1/L5/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_4UG0_242 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_8P9A_302 IL_89862.1 | |
| IL_4UG0_083 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_4UG0_084 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_4UG0_243 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | homologous IL_8P9A_305 IL_80252.1 | |
| IL_4UG0_085 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_4UG0_086 | 1/L5/2867:2872, 1/L5/2877:2883 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_4UG0_087 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_4UG0_088 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_4UG0_089 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_4UG0_090 | 1/L5/3660:3665, 1/L5/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_4UG0_091 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_4UG0_092 | 1/L5/3704:3705, 1/L5/3745:3748 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_4UG0_093 | 1/L5/3708:3714, 1/L5/3739:3742 | No text annotation | ||
| IL_4UG0_245 | 1/L5/3708:3721, 1/L5/3732:3742 | No text annotation | ||
| IL_4UG0_094 | 1/L5/3714:3721, 1/L5/3732:3739 | No text annotation | ||
| IL_4UG0_095 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_4UG0_096 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | geometric IL_5TBW_090 NA | |
| IL_4UG0_097 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_4UG0_098 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_4UG0_099 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_4UG0_100 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_4UG0_101 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_4UG0_102 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_5TBW_096 NA | |
| IL_4UG0_103 | 1/L5/4091:4129, 1/L5/4155:4158 | No text annotation | ||
| IL_4UG0_104 | 1/L5/4191:4192, 1/L5/4202:4204 | Single bulged A | homologous IL_5TBW_098 NA | |
| IL_4UG0_105 | 1/L5/4243:4245, 1/L5/4263:4267 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_4UG0_246 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_14190.2 | |
| IL_4UG0_107 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_5TBW_100 NA | |
| IL_4UG0_247 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend | geometric IL_5TBW_101 NA | |
| IL_4UG0_109 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform | geometric IL_4V9F_082 IL_48076.8 | |
| IL_4UG0_248 | 1/L5/4400:4403, 1/L5/4440:4444 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_4UG0_110 | 1/L5/4401:4403, 1/L5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_5TBW_103 NA | |
| IL_4UG0_111 | 1/L5/4403:4405, 1/L5/4439:4440 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_4UG0_249 | 1/L5/4405:4407, 1/L5/4435:4439 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_4UG0_113 | 1/L5/4412:4416, 1/L5/4426:4430 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_4UG0_114 | 1/L5/4453:4454, 1/L5/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_4UG0_115 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_4UG0_116 | 1/L5/4458:4459, 1/L5/4517:4520 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_4UG0_117 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_4UG0_251 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_4UG0_118 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_4UG0_119 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_5TBW_112 NA | |
| IL_4UG0_120 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | homologous IL_5TBW_113 NA | |
| IL_4UG0_121 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_4UG0_122 | 1/L5/4582:4585, 1/L5/4717:4721 | Double sheared | geometric IL_5J7L_256 NA | |
| IL_4UG0_123 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_4UG0_124 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_116 NA | |
| IL_4UG0_125 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_4UG0_126 | 1/L5/4632:4637, 1/L5/4662:4666 | UAA/GAN related | homologous IL_5TBW_118 NA | |
| IL_4UG0_127 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_011 IL_10892.2 | |
| IL_4UG0_252 | 1/L5/4638:4642, 1/L5/4655:4661 | No text annotation | ||
| IL_4UG0_128 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_4UG0_129 | 1/L5/4680:4685, 1/L5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
| IL_4UG0_131 | 1/L5/4742:4746, 1/L5/4954:4958 | Partly complementary | geometric IL_8D29_010 IL_71154.2 | |
| IL_4UG0_253 | 1/L5/4755:4765, 1/L5/4869:4878 | No text annotation | ||
| IL_4UG0_133 | 1/L5/4884:4889, 1/L5/4930:4935 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_4UG0_134 | 1/L5/4891:4896, 1/L5/4924:4928 | No text annotation | ||
| IL_4UG0_275 | 1/L5/4899:4901, 1/L5/4920:4921 | Single bulged C | geometric IL_3W3S_001 IL_05642.2 | |
| IL_4UG0_136 | 1/L5/4972:4975, 1/L5/4983:4986 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
| IL_4UG0_137 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_5UNE_003 IL_01003.2 | |
| IL_4UG0_138 | 1/L5/4996:4997, 1/L5/5053:5055 | No text annotation | ||
| IL_4UG0_139 | 1/L5/5000:5002, 1/L5/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_4UG0_140 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_4UG0_141 | 1/L5/5012:5014, 1/L5/5035:5036 | Single bulged C | geometric IL_1S03_006 IL_05642.2 | |
| IL_4UG0_255 | 1/L5/5012:5017, 1/L5/5032:5036 | No text annotation | ||
| IL_4UG0_142 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_4UG0_143 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_4UG0_144 | 1/L7/21:26, 1/L7/56:57 | No text annotation | ||
| IL_4UG0_256 | 1/L7/21:30, 1/L7/47:57 | No text annotation | ||
| IL_4UG0_145 | 1/L7/26:27, 1/L7/52:56 | No text annotation | ||
| IL_4UG0_146 | 1/L7/27:30, 1/L7/47:52 | No text annotation | homologous IL_7A0S_104 IL_05192.7 | |
| IL_4UG0_147 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4UG0_148 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_4UG0_149 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_4UG0_150 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_4UG0_276 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
| IL_4UG0_152 | 1/S2/23:25, 1/S2/649:651 | No text annotation | geometric IL_4KR9_002 NA | |
| IL_4UG0_154 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_4V88_385 NA | |
| IL_4UG0_155 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
| IL_4UG0_156 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_4UG0_157 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_4UG0_158 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_4V88_389 NA | |
| IL_4UG0_257 | 1/S2/63:68, 1/S2/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.2 | |
| IL_4UG0_160 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_4TS2_004 IL_71625.2 | |
| IL_4UG0_161 | 1/S2/110:112, 1/S2/349:351 | Isolated cWH basepair | geometric IL_4J50_003 IL_10892.2 | |
| IL_4UG0_162 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_4UG0_163 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_4V88_393 NA | |
| IL_4UG0_164 | 1/S2/151:154, 1/S2/164:167 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_4UG0_165 | 1/S2/188:192, 1/S2/207:211 | No text annotation | ||
| IL_4UG0_167 | 1/S2/317:321, 1/S2/330:333 | No text annotation | geometric IL_1J2B_001 IL_69301.1 | |
| IL_4UG0_168 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_4UG0_169 | 1/S2/366:371, 1/S2/393:394 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_4UG0_170 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_4UG0_277 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_8CRE_411 IL_10892.2 | |
| IL_4UG0_278 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | geometric IL_8C3A_424 NA | |
| IL_4UG0_172 | 1/S2/491:495, 1/S2/508:509 | C-loop | geometric IL_5J7L_018 NA | |
| IL_4UG0_173 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_4UG0_174 | 1/S2/527:531, 1/S2/553:558 | No text annotation | ||
| IL_4UG0_175 | 1/S2/599:608, 1/S2/635:637 | No text annotation | ||
| IL_4UG0_279 | 1/S2/611:617, 1/S2/624:632 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_4UG0_177 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 IL_01003.2 | |
| IL_4UG0_178 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_4UG0_258 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_4UG0_180 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_4UG0_280 | 1/S2/802:803, 1/S2/860:863 | No text annotation | homologous IL_8CRE_428 IL_73108.2 | |
| IL_4UG0_181 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_4UG0_259 | 1/S2/805:816, 1/S2/848:858 | No text annotation | ||
| IL_4UG0_182 | 1/S2/807:816, 1/S2/848:856 | No text annotation | ||
| IL_4UG0_183 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_4UG0_260 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_7KVT_002 IL_97561.2 | |
| IL_4UG0_261 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.2 | |
| IL_4UG0_186 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_4UG0_281 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.2 | |
| IL_4UG0_188 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | homologous IL_4V88_434 NA | |
| IL_4UG0_189 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_4UG0_262 | 1/S2/1042:1051, 1/S2/1067:1073 | No text annotation | ||
| IL_4UG0_190 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_4UG0_191 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_4UG0_192 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_4UG0_193 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_1YZ9_002 IL_01003.2 | |
| IL_4UG0_194 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4LFB_054 IL_34520.2 | |
| IL_4UG0_195 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_4UG0_196 | 1/S2/1203:1205, 1/S2/1693:1696 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.2 | |
| IL_4UG0_197 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_4V88_442 NA | |
| IL_4UG0_198 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_4UG0_199 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_4UG0_200 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_4UG0_201 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_4UG0_202 | 1/S2/1272:1324, 1/S2/1504:1510 | No text annotation | ||
| IL_4UG0_203 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_4UG0_264 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | homologous IL_8C3A_456 NA | |
| IL_4UG0_265 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_34117.1 | |
| IL_4UG0_205 | 1/S2/1336:1338, 1/S2/1488:1491 | Isolated non-canonical cWW pair | geometric IL_5TBW_008 NA | |
| IL_4UG0_206 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_4UG0_207 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_4UG0_208 | 1/S2/1536:1539, 1/S2/1594:1597 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_4UG0_266 | 1/S2/1541:1559, 1/S2/1576:1592 | No text annotation | ||
| IL_4UG0_210 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_4UG0_211 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | geometric IL_4V88_463 NA | |
| IL_4UG0_212 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_4V88_464 NA | |
| IL_4UG0_213 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_4UG0_267 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | ||
| IL_4UG0_215 | 1/S2/1713:1716, 1/S2/1817:1820 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_4UG0_216 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_4UG0_217 | 1/S2/1720:1723, 1/S2/1811:1813 | No text annotation | ||
| IL_4UG0_268 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_4UG0_219 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_4UG0_220 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4NGF_002 IL_01003.2 | |
| IL_4UG0_221 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4UG0_222 | No text annotation | ||
| IL_4UG0_010 | No text annotation | ||
| IL_4UG0_226 | No text annotation | ||
| IL_4UG0_270 | No text annotation | ||
| IL_4UG0_020 | Tandem non-canonical cWW pairs | ||
| IL_4UG0_227 | No text annotation | ||
| IL_4UG0_021 | No text annotation | ||
| IL_4UG0_022 | Single stack bend | ||
| IL_4UG0_228 | No text annotation | ||
| IL_4UG0_023 | Single stack bend | ||
| IL_4UG0_024 | No text annotation | ||
| IL_4UG0_027 | No text annotation | ||
| IL_4UG0_230 | No text annotation | ||
| IL_4UG0_033 | No text annotation | ||
| IL_4UG0_034 | No text annotation | ||
| IL_4UG0_037 | Isolated non-canonical cWW pair | ||
| IL_4UG0_234 | No text annotation | ||
| IL_4UG0_053 | No text annotation | ||
| IL_4UG0_237 | No text annotation | ||
| IL_4UG0_239 | No text annotation | ||
| IL_4UG0_076 | No text annotation | ||
| IL_4UG0_082 | No text annotation | ||
| IL_4UG0_244 | No text annotation | ||
| IL_4UG0_106 | Isolated non-canonical cWW pair | ||
| IL_4UG0_108 | No text annotation | ||
| IL_4UG0_112 | No text annotation | ||
| IL_4UG0_250 | Isolated non-canonical cWW pair | ||
| IL_4UG0_130 | No text annotation | ||
| IL_4UG0_274 | No text annotation | ||
| IL_4UG0_132 | No text annotation | ||
| IL_4UG0_254 | Tandem non-canonical cWW pairs | ||
| IL_4UG0_135 | Isolated non-canonical cWW pair | ||
| IL_4UG0_151 | No text annotation | ||
| IL_4UG0_153 | No text annotation | ||
| IL_4UG0_159 | No text annotation | ||
| IL_4UG0_166 | No text annotation | ||
| IL_4UG0_171 | Tandem non-canonical cWW pairs | ||
| IL_4UG0_176 | No text annotation | ||
| IL_4UG0_179 | Tandem non-canonical cWW pairs | ||
| IL_4UG0_184 | Isolated non-canonical cWW pair | ||
| IL_4UG0_185 | No text annotation | ||
| IL_4UG0_187 | Triple non-canonical cWW pairs | ||
| IL_4UG0_263 | Tandem non-canonical cWW pairs | ||
| IL_4UG0_204 | No text annotation | ||
| IL_4UG0_209 | Isolated non-canonical cWW pair | ||
| IL_4UG0_214 | No text annotation | ||
| IL_4UG0_218 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4UG0_001 | 1/L5/112:117, 1/L5/154:160, 1/L5/275:278 | No text annotation | ||
| J3_4UG0_023 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_4UG0_002 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_4UG0_024 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_4UG0_040 | 1/L5/448:458, 1/L5/698:704, 1/L5/1293:1298 | No text annotation | ||
| J3_4UG0_041 | 1/L5/711:713, 1/L5/955:977, 1/L5/1277:1285 | No text annotation | ||
| J3_4UG0_003 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_5TBW_004 NA | |
| J3_4UG0_004 | 1/L5/1545:1548, 1/L5/1580:1584, 1/L5/1609:1614 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_4UG0_042 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1836 | No text annotation | ||
| J3_4UG0_005 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_4UG0_006 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_4UG0_007 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_5TBW_010 NA | |
| J3_4UG0_043 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | ||
| J3_4UG0_008 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_4UG0_029 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_4UG0_009 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | geometric J3_7A0S_009 J3_17460.1 | |
| J3_4UG0_030 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_4UG0_044 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_4UG0_011 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_4UG0_031 | 1/L5/4970:4972, 1/L5/4986:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_4UG0_045 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_4UG0_014 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_4UG0_046 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_8P9A_068 J3_58657.1 | |
| J3_4UG0_047 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_8CRE_072 J3_63856.1 | |
| J3_4UG0_016 | 1/S2/682:685, 1/S2/917:922, 1/S2/1022:1023 | No text annotation | ||
| J3_4UG0_033 | 1/S2/682:685, 1/S2/917:923, 1/S2/1019:1023 | No text annotation | ||
| J3_4UG0_034 | 1/S2/816:820, 1/S2/828:831, 1/S2/843:848 | No text annotation | ||
| J3_4UG0_017 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_4UG0_018 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_4UG0_035 | 1/S2/1217:1221, 1/S2/1645:1651, 1/S2/1673:1681 | No text annotation | ||
| J3_4UG0_048 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_8CRE_079 J3_44359.1 | |
| J3_4UG0_049 | 1/S2/1237:1244, 1/S2/1255:1324, 1/S2/1504:1520 | No text annotation | ||
| J3_4UG0_050 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_4UG0_021 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_4UG0_051 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_4UG0_022 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | geometric J3_4LFB_009 J3_03192.1 | |
| J3_4UG0_039 | 1/S2/1532:1539, 1/S2/1594:1604, 1/S2/1635:1638 | No text annotation | ||
| J4_4UG0_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_4UG0_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_4UG0_003 | 1/L5/980:984, 1/L5/1069:1074, 1/L5/1236:1248, 1/L5/1262:1274 | No text annotation | ||
| J4_4UG0_004 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_4UG0_005 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_4UG0_017 | 1/L5/2549:2555, 1/L5/2572:2576, 1/L5/2585:2589, 1/L5/2756:2770 | No text annotation | ||
| J4_4UG0_018 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_4UG0_008 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_4UG0_009 | 1/L5/3696:3698, 1/L5/3752:3754, 1/L5/3770:3780, 1/L5/3814:3819 | No text annotation | ||
| J4_4UG0_019 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_4UG0_011 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_4UG0_012 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:595, 1/S2/641:644 | No text annotation | ||
| J4_4UG0_013 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:474 | No text annotation | ||
| J4_4UG0_014 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_4UG0_015 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J5_4UG0_008 | 1/L5/20:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:137 | No text annotation | ||
| J5_4UG0_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_4UG0_003 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J5_4UG0_004 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_4UG0_009 | 1/L5/3902:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4558 | No text annotation | ||
| J5_4UG0_006 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_4UG0_010 | 1/S2/123:145, 1/S2/174:186, 1/S2/213:219, 1/S2/302:314, 1/S2/336:341 | No text annotation | ||
| J6_4UG0_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J7_4UG0_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4UG0_025 | No text annotation | ||
| J3_4UG0_026 | No text annotation | ||
| J3_4UG0_027 | No text annotation | ||
| J3_4UG0_028 | No text annotation | ||
| J3_4UG0_010 | No text annotation | ||
| J3_4UG0_012 | No text annotation | ||
| J3_4UG0_013 | No text annotation | ||
| J3_4UG0_015 | No text annotation | ||
| J3_4UG0_032 | No text annotation | ||
| J3_4UG0_036 | No text annotation | ||
| J3_4UG0_019 | No text annotation | ||
| J3_4UG0_037 | No text annotation | ||
| J3_4UG0_020 | No text annotation | ||
| J3_4UG0_038 | No text annotation | ||
| J4_4UG0_006 | No text annotation | ||
| J4_4UG0_007 | No text annotation | ||
| J4_4UG0_010 | No text annotation | ||
| J4_4UG0_020 | tRNA junction | ||
| J4_4UG0_016 | No text annotation | ||
| J5_4UG0_001 | No text annotation | ||
| J5_4UG0_005 | No text annotation | ||
| J5_4UG0_007 | No text annotation |
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