HL_4UG0_016

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCGAAGAGGG

Length

11 nucleotides

Bulged bases

4UG0|1|L5|A|1255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_016 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.289

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4UG0|1|L5|C|1250
4UG0|1|L5|C|1251
4UG0|1|L5|C|1252
4UG0|1|L5|G|1253
4UG0|1|L5|A|1254
4UG0|1|L5|A|1255
4UG0|1|L5|G|1256
4UG0|1|L5|A|1257
4UG0|1|L5|G|1258
4UG0|1|L5|G|1259
4UG0|1|L5|G|1260

Current chains

Chain L5

28S ribosomal RNA

Nearby chains