HL_4UG0_031

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCGCGCCCGCCCCCGGAGCCCCGCGGACGCUACG

Length

73 nucleotides

Bulged bases

4UG0|1|L5|G|2111, 4UG0|1|L5|C|2119, 4UG0|1|L5|C|2123, 4UG0|1|L5|G|2124, 4UG0|1|L5|C|2247, 4UG0|1|L5|G|2254, 4UG0|1|L5|G|2259, 4UG0|1|L5|C|2264, 4UG0|1|L5|U|2267, 4UG0|1|L5|C|2269

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|L5|C|2087
4UG0|1|L5|A|2088
4UG0|1|L5|G|2089
4UG0|1|L5|U|2090
4UG0|1|L5|C|2091
4UG0|1|L5|G|2092
4UG0|1|L5|A|2093
4UG0|1|L5|G|2094
4UG0|1|L5|A|2095
4UG0|1|L5|G|2096
4UG0|1|L5|U|2097
4UG0|1|L5|G|2098
4UG0|1|L5|G|2099
4UG0|1|L5|A|2100
4UG0|1|L5|C|2101
4UG0|1|L5|G|2102
4UG0|1|L5|G|2103
4UG0|1|L5|G|2104
4UG0|1|L5|A|2105
4UG0|1|L5|G|2106
4UG0|1|L5|C|2107
4UG0|1|L5|G|2108
4UG0|1|L5|G|2109
4UG0|1|L5|C|2110
4UG0|1|L5|G|2111
4UG0|1|L5|G|2112
4UG0|1|L5|G|2113
4UG0|1|L5|G|2114
4UG0|1|L5|G|2115
4UG0|1|L5|C|2116
4UG0|1|L5|G|2117
4UG0|1|L5|G|2118
4UG0|1|L5|C|2119
4UG0|1|L5|G|2120
4UG0|1|L5|C|2121
4UG0|1|L5|G|2122
4UG0|1|L5|C|2123
4UG0|1|L5|G|2124
4UG0|1|L5|C|2125
4UG0|1|L5|G|2126
4UG0|1|L5|C|2127
4UG0|1|L5|G|2128
4UG0|1|L5|C|2129
4UG0|1|L5|G|2130
4UG0|1|L5|C|2131
4UG0|1|L5|C|2243
4UG0|1|L5|C|2244
4UG0|1|L5|G|2245
4UG0|1|L5|C|2246
4UG0|1|L5|C|2247
4UG0|1|L5|C|2248
4UG0|1|L5|C|2249
4UG0|1|L5|C|2250
4UG0|1|L5|G|2251
4UG0|1|L5|G|2252
4UG0|1|L5|A|2253
4UG0|1|L5|G|2254
4UG0|1|L5|C|2255
4UG0|1|L5|C|2256
4UG0|1|L5|C|2257
4UG0|1|L5|C|2258
4UG0|1|L5|G|2259
4UG0|1|L5|C|2260
4UG0|1|L5|G|2261
4UG0|1|L5|G|2262
4UG0|1|L5|A|2263
4UG0|1|L5|C|2264
4UG0|1|L5|G|2265
4UG0|1|L5|C|2266
4UG0|1|L5|U|2267
4UG0|1|L5|A|2268
4UG0|1|L5|C|2269
4UG0|1|L5|G|2270

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S RIBOSOMAL PROTEIN L4

Chain LE

60S RIBOSOMAL PROTEIN L6

Chain LF

60S RIBOSOMAL PROTEIN L7

Chain LQ

60S RIBOSOMAL PROTEIN L18

Chain Lr

60S RIBOSOMAL PROTEIN L28