HL_4UG0_040
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGUUCUCUUUU
- Length
- 11 nucleotides
- Bulged bases
- 4UG0|1|L5|U|2631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UG0_040 not in the Motif Atlas
- Geometric match to HL_6JXM_001
- Geometric discrepancy: 0.3959
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
4UG0|1|L5|A|2623
4UG0|1|L5|G|2624
4UG0|1|L5|U|2625
4UG0|1|L5|U|2626
4UG0|1|L5|C|2627
4UG0|1|L5|U|2628
4UG0|1|L5|C|2629
4UG0|1|L5|U|2630
4UG0|1|L5|U|2631
4UG0|1|L5|U|2632
4UG0|1|L5|U|2633
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LR
- 60S RIBOSOMAL PROTEIN L19
- Chain LU
- 60S RIBOSOMAL PROTEIN L22
Coloring options: