HL_4UG0_055

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUUU

Length

70 nucleotides

Bulged bases

4UG0|1|L5|A|3962, 4UG0|1|L5|G|4034, 4UG0|1|L5|G|4035, 4UG0|1|L5|U|4044, 4UG0|1|L5|A|4046, 4UG0|1|L5|A|4053, 4UG0|1|L5|C|4054, 4UG0|1|L5|U|4055

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|L5|G|3944
4UG0|1|L5|A|3945
4UG0|1|L5|G|3946
4UG0|1|L5|A|3947
4UG0|1|L5|C|3948
4UG0|1|L5|A|3949
4UG0|1|L5|U|3950
4UG0|1|L5|G|3951
4UG0|1|L5|A|3952
4UG0|1|L5|G|3953
4UG0|1|L5|A|3954
4UG0|1|L5|G|3955
4UG0|1|L5|G|3956
4UG0|1|L5|U|3957
4UG0|1|L5|G|3958
4UG0|1|L5|U|3959
4UG0|1|L5|A|3960
4UG0|1|L5|G|3961
4UG0|1|L5|A|3962
4UG0|1|L5|A|3963
4UG0|1|L5|U|3964
4UG0|1|L5|A|3965
4UG0|1|L5|A|3966
4UG0|1|L5|G|3967
4UG0|1|L5|U|3968
4UG0|1|L5|G|3969
4UG0|1|L5|G|3970
4UG0|1|L5|G|3971
4UG0|1|L5|A|3972
4UG0|1|L5|G|3973
4UG0|1|L5|G|3974
4UG0|1|L5|C|3975
4UG0|1|L5|C|3976
4UG0|1|L5|C|3977
4UG0|1|L5|G|4034
4UG0|1|L5|G|4035
4UG0|1|L5|G|4036
4UG0|1|L5|C|4037
4UG0|1|L5|C|4038
4UG0|1|L5|G|4039
4UG0|1|L5|C|4040
4UG0|1|L5|C|4041
4UG0|1|L5|G|4042
4UG0|1|L5|G|4043
4UG0|1|L5|U|4044
4UG0|1|L5|G|4045
4UG0|1|L5|A|4046
4UG0|1|L5|A|4047
4UG0|1|L5|A|4048
4UG0|1|L5|U|4049
4UG0|1|L5|A|4050
4UG0|1|L5|C|4051
4UG0|1|L5|C|4052
4UG0|1|L5|A|4053
4UG0|1|L5|C|4054
4UG0|1|L5|U|4055
4UG0|1|L5|A|4056
4UG0|1|L5|C|4057
4UG0|1|L5|U|4058
4UG0|1|L5|C|4059
4UG0|1|L5|U|4060
4UG0|1|L5|G|4061
4UG0|1|L5|A|4062
4UG0|1|L5|U|4063
4UG0|1|L5|C|4064
4UG0|1|L5|G|4065
4UG0|1|L5|U|4066
4UG0|1|L5|U|4067
4UG0|1|L5|U|4068
4UG0|1|L5|U|4069

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Li

60S RIBOSOMAL PROTEIN L36

Chain Lz

60S RIBOSOMAL PROTEIN L10A

Chain S6

Transfer RNA; tRNA

Chain SB

40S RIBOSOMAL PROTEIN S3A