HL_4UG0_057

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4UG0|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_057 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1622

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4UG0|1|L5|C|4193
4UG0|1|L5|U|4194
4UG0|1|L5|G|4195
4UG0|1|L5|G|4196
4UG0|1|L5|G|4197
4UG0|1|L5|G|4198
4UG0|1|L5|C|4199
4UG0|1|L5|G|4200
4UG0|1|L5|G|4201

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S RIBOSOMAL PROTEIN L10-LIKE

Chain Lb

60S RIBOSOMAL PROTEIN L29