HL_4UG0_062

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_062 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.1478

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UG0|1|L5|U|4321
4UG0|1|L5|G|4322
4UG0|1|L5|A|4323
4UG0|1|L5|A|4324
4UG0|1|L5|A|4325
4UG0|1|L5|G|4326

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S RIBOSOMAL PROTEIN L5

Chain LT

60S RIBOSOMAL PROTEIN L21

Chain Lo

60S RIBOSOMAL PROTEIN L36A