HL_4UG0_069

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_069 not in the Motif Atlas

Geometric match to HL_3R4F_002

Geometric discrepancy: 0.3957

The information below is about HL_3R4F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38592.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

4UG0|1|L5|C|4645
4UG0|1|L5|U|4646
4UG0|1|L5|G|4647
4UG0|1|L5|A|4648
4UG0|1|L5|G|4649
4UG0|1|L5|G|4650
4UG0|1|L5|A|4651
4UG0|1|L5|G|4652

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S RIBOSOMAL PROTEIN L19

Chain LU

60S RIBOSOMAL PROTEIN L22

Chain Ld

60S RIBOSOMAL PROTEIN L31