HL_4UG0_070

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

4UG0|1|L5|G|4694, 4UG0|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_070 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1454

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4UG0|1|L5|C|4688
4UG0|1|L5|U|4689
4UG0|1|L5|G|4690
4UG0|1|L5|A|4691
4UG0|1|L5|A|4692
4UG0|1|L5|C|4693
4UG0|1|L5|G|4694
4UG0|1|L5|C|4695
4UG0|1|L5|C|4696
4UG0|1|L5|U|4697
4UG0|1|L5|C|4698
4UG0|1|L5|U|4699
4UG0|1|L5|A|4700
4UG0|1|L5|A|4701
4UG0|1|L5|G|4702

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S RIBOSOMAL PROTEIN L9

Chain LO

60S RIBOSOMAL PROTEIN L13A

Chain Lm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40