HL_4UG0_072

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_072 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2092

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4UG0|1|L5|G|4907
4UG0|1|L5|G|4908
4UG0|1|L5|A|4909
4UG0|1|L5|G|4910
4UG0|1|L5|A|4911
4UG0|1|L5|G|4912
4UG0|1|L5|G|4913
4UG0|1|L5|C|4914

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S RIBOSOMAL PROTEIN L3

Chain LO

60S RIBOSOMAL PROTEIN L13A