HL_4UG0_084

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

4UG0|1|S2|U|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_084 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2782

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4UG0|1|S2|C|195
4UG0|1|S2|C|196
4UG0|1|S2|U|197
4UG0|1|S2|U|198
4UG0|1|S2|C|199
4UG0|1|S2|G|200
4UG0|1|S2|C|201
4UG0|1|S2|G|202
4UG0|1|S2|G|203
4UG0|1|S2|G|204

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S RIBOSOMAL PROTEIN S8