HL_4UG0_085

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

4UG0|1|S2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_085 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1983

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4UG0|1|S2|G|288
4UG0|1|S2|G|289
4UG0|1|S2|U|290
4UG0|1|S2|G|291
4UG0|1|S2|A|292
4UG0|1|S2|C|293
4UG0|1|S2|U|294
4UG0|1|S2|C|295

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S RIBOSOMAL PROTEIN S4, X ISOFORM

Chain SG

40S RIBOSOMAL PROTEIN S6

Chain SL

40S RIBOSOMAL PROTEIN S11