HL_4UG0_099
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUCAGAUACCG
- Length
- 13 nucleotides
- Bulged bases
- 4UG0|1|S2|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UG0_099 not in the Motif Atlas
- Geometric match to HL_1FIR_001
- Geometric discrepancy: 0.3762
- The information below is about HL_1FIR_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 18
Unit IDs
4UG0|1|S2|C|1053
4UG0|1|S2|G|1054
4UG0|1|S2|A|1055
4UG0|1|S2|U|1056
4UG0|1|S2|C|1057
4UG0|1|S2|A|1058
4UG0|1|S2|G|1059
4UG0|1|S2|A|1060
4UG0|1|S2|U|1061
4UG0|1|S2|A|1062
4UG0|1|S2|C|1063
4UG0|1|S2|C|1064
4UG0|1|S2|G|1065
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S6
- Transfer RNA; tRNA
- Chain SF
- 40S RIBOSOMAL PROTEIN S5
- Chain SO
- 40S RIBOSOMAL PROTEIN S14
- Chain Sa
- 40S RIBOSOMAL PROTEIN S26
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