HL_4UG0_115
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UG0_115 not in the Motif Atlas
- Homologous match to HL_1U0B_003
- Geometric discrepancy: 0.2708
- The information below is about HL_1U0B_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
4UG0|1|S6|G|53
4UG0|1|S6|A|54
4UG0|1|S6|U|55
4UG0|1|S6|C|56
4UG0|1|S6|G|57
4UG0|1|S6|A|58
4UG0|1|S6|A|59
4UG0|1|S6|A|60
4UG0|1|S6|C|61
Current chains
- Chain S6
- HUMAN INITIATOR MET-TRNA-I
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lz
- 60S RIBOSOMAL PROTEIN L10A
Coloring options: