HL_4UG0_116

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

4UG0|1|L5|C|1172, 4UG0|1|L5|C|1180, 4UG0|1|L5|C|1181, 4UG0|1|L5|C|1182, 4UG0|1|L5|A|1184

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UG0|1|L5|G|1170
4UG0|1|L5|G|1171
4UG0|1|L5|C|1172
4UG0|1|L5|G|1173
4UG0|1|L5|G|1174
4UG0|1|L5|A|1175
4UG0|1|L5|C|1176
4UG0|1|L5|U|1177
4UG0|1|L5|G|1178
4UG0|1|L5|U|1179
4UG0|1|L5|C|1180
4UG0|1|L5|C|1181
4UG0|1|L5|C|1182
4UG0|1|L5|C|1183
4UG0|1|L5|A|1184
4UG0|1|L5|G|1185
4UG0|1|L5|U|1186
4UG0|1|L5|G|1187
4UG0|1|L5|C|1188
4UG0|1|L5|G|1189
4UG0|1|L5|C|1190
4UG0|1|L5|C|1191

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S RIBOSOMAL PROTEIN L5

Chain LI

60S RIBOSOMAL PROTEIN L10-LIKE