HL_4UG0_128
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCCCGAGCCGC
- Length
- 11 nucleotides
- Bulged bases
- 4UG0|1|S2|G|836, 4UG0|1|S2|G|838, 4UG0|1|S2|C|839, 4UG0|1|S2|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UG0_128 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2681
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4UG0|1|S2|G|832
4UG0|1|S2|C|833
4UG0|1|S2|C|834
4UG0|1|S2|C|835
4UG0|1|S2|G|836
4UG0|1|S2|A|837
4UG0|1|S2|G|838
4UG0|1|S2|C|839
4UG0|1|S2|C|840
4UG0|1|S2|G|841
4UG0|1|S2|C|842
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S RIBOSOMAL PROTEIN S4, X ISOFORM
- Chain SY
- 40S RIBOSOMAL PROTEIN S24
Coloring options: