HL_4UG0_132

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

4UG0|1|L5|U|2707, 4UG0|1|L5|U|2708, 4UG0|1|L5|C|2709, 4UG0|1|L5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_132 not in the Motif Atlas

Homologous match to HL_8GLP_043

Geometric discrepancy: 0.5336

The information below is about HL_8GLP_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.5

Basepair signature

cWW-F-F

Number of instances in this motif group

21

Unit IDs

4UG0|1|L5|C|2704
4UG0|1|L5|G|2705
4UG0|1|L5|G|2706
4UG0|1|L5|U|2707
4UG0|1|L5|U|2708
4UG0|1|L5|C|2709
4UG0|1|L5|C|2710
4UG0|1|L5|G|2711
4UG0|1|L5|G|2712

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S RIBOSOMAL PROTEIN L19

Chain LU

60S RIBOSOMAL PROTEIN L22

Chain LX

60S RIBOSOMAL PROTEIN L23A