HL_4UJC_008

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCUUGGGAAUGC

Length

12 nucleotides

Bulged bases

4UJC|1|A2|A|286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|279
4UJC|1|A2|C|280
4UJC|1|A2|U|281
4UJC|1|A2|U|282
4UJC|1|A2|G|283
4UJC|1|A2|G|284
4UJC|1|A2|G|285
4UJC|1|A2|A|286
4UJC|1|A2|A|287
4UJC|1|A2|U|288
4UJC|1|A2|G|289
4UJC|1|A2|C|290

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13

Chain BN

60S RIBOSOMAL PROTEIN L15

Chain Ba

60S RIBOSOMAL PROTEIN L27A

Chain Bo

60S RIBOSOMAL PROTEIN L36A