4UJC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4UJC_001 | 1/A2/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_4UJC_002 | 1/A2/68:73 | No text annotation | geometric HL_4O26_001 HL_35941.1 | |
| HL_4UJC_003 | 1/A2/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_4UJC_004 | 1/A2/126:142 | No text annotation | ||
| HL_4UJC_122 | 1/A2/201:208 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_01609.3 | |
| HL_4UJC_006 | 1/A2/219:223 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_4UJC_007 | 1/A2/227:235 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_4UJC_123 | 1/A2/280:289 | T-loop related | homologous HL_8P9A_120 HL_77436.5 | |
| HL_4UJC_009 | 1/A2/305:314 | Pseudoknot geometry | homologous HL_5TBW_009 NA | |
| HL_4UJC_010 | 1/A2/359:364 | GNRA | homologous HL_5TBW_010 NA | |
| HL_4UJC_011 | 1/A2/384:389 | No text annotation | geometric HL_4O26_001 HL_35941.1 | |
| HL_4UJC_124 | 1/A2/1153:1168 | No text annotation | ||
| HL_4UJC_013 | 1/A2/1158:1163 | No text annotation | ||
| HL_4UJC_014 | 1/A2/1297:1306 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_014 NA | |
| HL_4UJC_125 | 1/A2/1344:1353 | No text annotation | ||
| HL_4UJC_016 | 1/A2/1369:1374 | GNRA | homologous HL_5TBW_016 NA | |
| HL_4UJC_017 | 1/A2/1386:1391 | No text annotation | ||
| HL_4UJC_018 | 1/A2/1416:1428 | No text annotation | ||
| HL_4UJC_137 | 1/A2/1458:1465 | No text annotation | ||
| HL_4UJC_020 | 1/A2/1540:1545 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_4UJC_021 | 1/A2/1572:1581 | No text annotation | homologous HL_8P9A_132 HL_88205.2 | |
| HL_4UJC_022 | 1/A2/1606:1614 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_4UJC_023 | 1/A2/1654:1659 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_4UJC_024 | 1/A2/1742:1748 | No text annotation | ||
| HL_4UJC_025 | 1/A2/1795:1802 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4UJC_026 | 1/A2/1842:1848 | GNRA | homologous HL_5TBW_025 NA | |
| HL_4UJC_027 | 1/A2/1864:1871 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_4UJC_030 | 1/A2/2293:2298 | GNRA | homologous HL_5TBW_030 NA | |
| HL_4UJC_031 | 1/A2/2353:2361 | T-loop with 2 stacked bulged bases | homologous HL_5TBW_031 NA | |
| HL_4UJC_138 | 1/A2/2397:2403 | Pseudoknot geometry with 3' bulge | homologous HL_8P9A_144 HL_57176.2 | |
| HL_4UJC_033 | 1/A2/2435:2440 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_4UJC_139 | 1/A2/2464:2468 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_4UJC_035 | 1/A2/2500:2509 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_4UJC_036 | 1/A2/2537:2544 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4UJC_037 | 1/A2/2555:2560 | GNRA | homologous HL_5TBW_036 NA | |
| HL_4UJC_038 | 1/A2/2601:2609 | No text annotation | homologous HL_5TBW_037 NA | |
| HL_4UJC_039 | 1/A2/2641:2647 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_4UJC_040 | 1/A2/2681:2689 | No text annotation | ||
| HL_4UJC_041 | 1/A2/2715:2719 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_4UJC_042 | 1/A2/2769:2776 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_4UJC_043 | 1/A2/2787:2793 | GNRA | homologous HL_5TBW_042 NA | |
| HL_4UJC_044 | 1/A2/2849:2854 | UNCG | homologous HL_8C3A_043 NA | |
| HL_4UJC_046 | 1/A2/3583:3587 | No text annotation | homologous HL_5TBW_045 NA | |
| HL_4UJC_047 | 1/A2/3608:3618 | No text annotation | homologous HL_5TBW_046 NA | |
| HL_4UJC_048 | 1/A2/3637:3643 | GNRA | homologous HL_5TBW_047 NA | |
| HL_4UJC_049 | 1/A2/3693:3698 | GNRA | homologous HL_8C3A_048 NA | |
| HL_4UJC_050 | 1/A2/3726:3736 | No text annotation | homologous HL_5TBW_049 NA | |
| HL_4UJC_051 | 1/A2/3765:3773 | No text annotation | homologous HL_5TBW_050 NA | |
| HL_4UJC_052 | 1/A2/3842:3851 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_4UJC_140 | 1/A2/4070:4074 | No text annotation | ||
| HL_4UJC_054 | 1/A2/4102:4109 | No text annotation | ||
| HL_4UJC_055 | 1/A2/4153:4161 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_4UJC_056 | 1/A2/4170:4182 | No text annotation | homologous HL_5TBW_055 NA | |
| HL_4UJC_057 | 1/A2/4210:4218 | No text annotation | homologous HL_5TBW_056 NA | |
| HL_4UJC_058 | 1/A2/4230:4237 | Pseudoknot geometry | homologous HL_5TBW_057 NA | |
| HL_4UJC_059 | 1/A2/4261:4269 | No text annotation | ||
| HL_4UJC_126 | 1/A2/4281:4286 | GNRA | homologous HL_8P9A_170 HL_37824.8 | |
| HL_4UJC_061 | 1/A2/4312:4322 | No text annotation | geometric HL_4V83_139 NA | |
| HL_4UJC_062 | 1/A2/4377:4385 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_4UJC_141 | 1/A2/4434:4441 | GNRA variation | homologous HL_8P9A_173 HL_31585.4 | |
| HL_4UJC_064 | 1/A2/4457:4463 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_4UJC_065 | 1/A2/4500:4505 | GNRA | homologous HL_5TBW_064 NA | |
| HL_4UJC_066 | 1/A2/4563:4568 | GNRA | homologous HL_5TBW_065 NA | |
| HL_4UJC_067 | 1/A2/4606:4611 | Ribsomal LSU H95 | homologous HL_5TBW_066 NA | |
| HL_4UJC_068 | 1/A2/4648:4662 | No text annotation | homologous HL_5TBW_067 NA | |
| HL_4UJC_069 | 1/A2/4862:4869 | No text annotation | ||
| HL_4UJC_070 | 1/A2/4930:4938 | No text annotation | homologous HL_5TBW_070 NA | |
| HL_4UJC_142 | 1/A2/4976:4983 | No text annotation | geometric HL_8P9A_179 HL_08100.1 | |
| HL_4UJC_072 | 1/A3/47:56 | Pseudoknot with intercalation | geometric HL_7A0S_001 HL_93438.2 | |
| HL_4UJC_073 | 1/A3/69:88 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_4UJC_074 | 1/A3/108:111 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_4UJC_075 | 1/A3/122:128 | No text annotation | ||
| HL_4UJC_076 | 1/A4/28:51 | No text annotation | ||
| HL_4UJC_077 | 1/A4/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_4UJC_078 | 1/AA/13:22 | tRNA D-loop | homologous HL_3TUP_001 HL_45175.1 | |
| HL_4UJC_079 | 1/AA/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.7 | |
| HL_4UJC_080 | 1/AA/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_28252.9 | |
| HL_4UJC_081 | 1/AC/79:87 | No text annotation | ||
| HL_4UJC_082 | 1/AC/161:166 | No text annotation | ||
| HL_4UJC_084 | 1/AC/231:236 | No text annotation | ||
| HL_4UJC_085 | 1/AC/263:270 | No text annotation | ||
| HL_4UJC_129 | 1/AC/294:299 | No text annotation | ||
| HL_4UJC_087 | 1/AC/304:313 | No text annotation | ||
| HL_4UJC_088 | 1/C1/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_4UJC_089 | 1/C1/63:85 | No text annotation | ||
| HL_4UJC_090 | 1/C1/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_4UJC_130 | 1/C1/197:202 | No text annotation | ||
| HL_4UJC_093 | 1/C1/322:329 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_005 NA | |
| HL_4UJC_094 | 1/C1/377:387 | No text annotation | geometric HL_4WSM_226 NA | |
| HL_4UJC_095 | 1/C1/416:421 | No text annotation | homologous HL_4V88_194 NA | |
| HL_4UJC_096 | 1/C1/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_4UJC_097 | 1/C1/462:467 | UNCG | homologous HL_4V88_196 NA | |
| HL_4UJC_098 | 1/C1/498:504 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4UJC_099 | 1/C1/539:544 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_4UJC_143 | 1/C1/566:584 | No text annotation | ||
| HL_4UJC_100 | 1/C1/569:581 | No text annotation | ||
| HL_4UJC_101 | 1/C1/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_4UJC_102 | 1/C1/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_4UJC_103 | 1/C1/833:841 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_4UJC_144 | 1/C1/885:901 | No text annotation | homologous HL_8P9A_236 HL_88364.2 | |
| HL_4UJC_105 | 1/C1/957:966 | No text annotation | homologous HL_4V88_206 NA | |
| HL_4UJC_106 | 1/C1/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_4UJC_132 | 1/C1/1052:1066 | No text annotation | ||
| HL_4UJC_107 | 1/C1/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_4UJC_145 | 1/C1/1113:1120 | No text annotation | ||
| HL_4UJC_109 | 1/C1/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_4UJC_110 | 1/C1/1178:1183 | GNRA | homologous HL_4V88_211 NA | |
| HL_4UJC_111 | 1/C1/1245:1254 | No text annotation | geometric HL_4V88_212 NA | |
| HL_4UJC_146 | 1/C1/1295:1304 | GNRA wlth extra near cWW | homologous HL_8CRE_217 HL_81538.2 | |
| HL_4UJC_113 | 1/C1/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_4UJC_114 | 1/C1/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_4UJC_115 | 1/C1/1420:1427 | No text annotation | ||
| HL_4UJC_135 | 1/C1/1460:1466 | GNRA | geometric HL_5TBW_059 NA | |
| HL_4UJC_117 | 1/C1/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_4UJC_118 | 1/C1/1614:1625 | No text annotation | homologous HL_8P9A_222 HL_67079.1 | |
| HL_4UJC_119 | 1/C1/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_4UJC_120 | 1/C1/1763:1769 | GNRA | geometric HL_3SUX_002 HL_37824.8 | |
| HL_4UJC_121 | 1/C1/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4UJC_005 | No text annotation | ||
| HL_4UJC_008 | No text annotation | ||
| HL_4UJC_012 | No text annotation | ||
| HL_4UJC_015 | No text annotation | ||
| HL_4UJC_019 | No text annotation | ||
| HL_4UJC_028 | No text annotation | ||
| HL_4UJC_029 | No text annotation | ||
| HL_4UJC_032 | No text annotation | ||
| HL_4UJC_034 | No text annotation | ||
| HL_4UJC_045 | No text annotation | ||
| HL_4UJC_053 | No text annotation | ||
| HL_4UJC_060 | GNRA with extra cWW | ||
| HL_4UJC_063 | No text annotation | ||
| HL_4UJC_127 | No text annotation | ||
| HL_4UJC_071 | No text annotation | ||
| HL_4UJC_128 | No text annotation | ||
| HL_4UJC_083 | No text annotation | ||
| HL_4UJC_086 | No text annotation | ||
| HL_4UJC_091 | No text annotation | ||
| HL_4UJC_092 | No text annotation | ||
| HL_4UJC_131 | No text annotation | ||
| HL_4UJC_104 | No text annotation | ||
| HL_4UJC_133 | No text annotation | ||
| HL_4UJC_108 | No text annotation | ||
| HL_4UJC_112 | No text annotation | ||
| HL_4UJC_134 | GNRA with extra cWW | ||
| HL_4UJC_116 | tRNA anticodon loop | ||
| HL_4UJC_136 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4UJC_001 | 1/A2/2:11, 1/A3/145:155 | No text annotation | ||
| IL_4UJC_319 | 1/A2/4:18, 1/A3/139:153 | No text annotation | ||
| IL_4UJC_002 | 1/A2/11:16, 1/A3/141:145 | Other IL | geometric IL_4WF9_084 NA | |
| IL_4UJC_003 | 1/A2/16:19, 1/A3/138:141 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
| IL_4UJC_251 | 1/A2/31:37, 1/A2/44:51 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_04346.10 | |
| IL_4UJC_005 | 1/A2/81:88, 1/A2/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_4UJC_320 | 1/A2/164:179, 1/A2/249:259 | No text annotation | ||
| IL_4UJC_006 | 1/A2/177:179, 1/A2/249:250 | Minor groove platform | geometric IL_7A0S_028 IL_51454.3 | |
| IL_4UJC_321 | 1/A2/181:189, 1/A2/246:247 | No text annotation | ||
| IL_4UJC_008 | 1/A2/339:341, 1/A3/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_4UJC_009 | 1/A2/378:382, 1/A2/390:405 | No text annotation | ||
| IL_4UJC_254 | 1/A2/378:384, 1/A2/389:405 | No text annotation | ||
| IL_4UJC_010 | 1/A2/382:384, 1/A2/389:390 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_4UJC_011 | 1/A2/406:412, 1/A3/13:19 | Triple sheared with non-canonical cWW | homologous IL_5TBW_015 NA | |
| IL_4UJC_012 | 1/A2/433:437, 1/A2/1280:1285 | No text annotation | ||
| IL_4UJC_013 | 1/A2/450:452, 1/A2/683:685 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_4UJC_322 | 1/A2/455:465, 1/A2/672:680 | No text annotation | ||
| IL_4UJC_323 | 1/A2/471:478, 1/A2/665:666 | No text annotation | ||
| IL_4UJC_016 | 1/A2/482:484, 1/A2/660:661 | No text annotation | ||
| IL_4UJC_324 | 1/A2/487:489, 1/A2/655:657 | No text annotation | ||
| IL_4UJC_018 | 1/A2/491:493, 1/A2/651:653 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_4UJC_019 | 1/A2/496:498, 1/A2/646:648 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 IL_87907.2 | |
| IL_4UJC_257 | 1/A2/501:503, 1/A2/640:643 | No text annotation | ||
| IL_4UJC_325 | 1/A2/708:717, 1/A2/921:932 | No text annotation | ||
| IL_4UJC_021 | 1/A2/710:712, 1/A2/926:930 | No text annotation | ||
| IL_4UJC_022 | 1/A2/714:717, 1/A2/921:924 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_4UJC_023 | 1/A2/718:725, 1/A2/911:920 | No text annotation | ||
| IL_4UJC_024 | 1/A2/728:730, 1/A2/906:908 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_4UJC_025 | 1/A2/733:737, 1/A2/900:903 | No text annotation | ||
| IL_4UJC_260 | 1/A2/739:740, 1/A2/895:898 | Multiple bulged bases | geometric IL_7Q80_001 IL_84476.1 | |
| IL_4UJC_027 | 1/A2/955:956, 1/A2/1257:1259 | Multiple bulged bases | geometric IL_7Q80_001 IL_84476.1 | |
| IL_4UJC_028 | 1/A2/958:962, 1/A2/1252:1255 | No text annotation | ||
| IL_4UJC_029 | 1/A2/1057:1062, 1/A2/1198:1203 | No text annotation | ||
| IL_4UJC_030 | 1/A2/1063:1064, 1/A2/1193:1197 | Multiple bulged bases | geometric IL_1R3E_001 IL_84476.1 | |
| IL_4UJC_031 | 1/A2/1064:1067, 1/A2/1189:1193 | No text annotation | ||
| IL_4UJC_032 | 1/A2/1077:1078, 1/A2/1177:1179 | No text annotation | ||
| IL_4UJC_033 | 1/A2/1092:1095, 1/A2/1138:1141 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 IL_85033.2 | |
| IL_4UJC_034 | 1/A2/1153:1155, 1/A2/1166:1168 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_4UJC_035 | 1/A2/1223:1225, 1/A2/1245:1246 | No text annotation | ||
| IL_4UJC_326 | 1/A2/1338:1341, 1/A2/1356:1361 | No text annotation | ||
| IL_4UJC_264 | 1/A2/1405:1408, 1/A2/1436:1439 | Tandem non-canonical cWW pairs | geometric IL_5EW4_002 IL_85033.2 | |
| IL_4UJC_038 | 1/A2/1411:1414, 1/A2/1430:1433 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_4UJC_039 | 1/A2/1446:1447, 1/A2/1475:1477 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_4UJC_040 | 1/A2/1453:1455, 1/A2/1468:1469 | Minor groove platform | geometric IL_7A0S_076 IL_51454.3 | |
| IL_4UJC_041 | 1/A2/1499:1501, 1/A2/1634:1636 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
| IL_4UJC_266 | 1/A2/1499:1505, 1/A2/1627:1636 | No text annotation | ||
| IL_4UJC_042 | 1/A2/1501:1505, 1/A2/1627:1634 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_4UJC_043 | 1/A2/1529:1534, 1/A2/1551:1557 | No text annotation | geometric IL_4V88_462 NA | |
| IL_4UJC_044 | 1/A2/1565:1568, 1/A2/1584:1586 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_4UJC_045 | 1/A2/1569:1571, 1/A2/1582:1583 | Single bulged U | homologous IL_5TBW_032 NA | |
| IL_4UJC_046 | 1/A2/1603:1605, 1/A2/1615:1619 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_4UJC_047 | 1/A2/1650:1652, 1/A2/1661:1663 | Isolated non-canonical cWW pair | homologous IL_5TBW_034 NA | |
| IL_4UJC_048 | 1/A2/1665:1667, 1/A2/1826:1829 | No text annotation | ||
| IL_4UJC_050 | 1/A2/1702:1704, 1/A2/1816:1817 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_4UJC_051 | 1/A2/1710:1716, 1/A2/1771:1777 | No text annotation | homologous IL_8C3A_041 NA | |
| IL_4UJC_268 | 1/A2/1710:1717, 1/A2/1769:1777 | No text annotation | ||
| IL_4UJC_052 | 1/A2/1716:1717, 1/A2/1769:1771 | Minor groove platform | homologous IL_5TBW_039 NA | |
| IL_4UJC_327 | 1/A2/1718:1723, 1/A2/1765:1768 | C-loop with bulged stacked A's | homologous IL_8P9A_268 IL_26222.2 | |
| IL_4UJC_054 | 1/A2/1725:1728, 1/A2/1760:1763 | Tandem non-canonical cWW pairs | homologous IL_5TBW_041 NA | |
| IL_4UJC_269 | 1/A2/1728:1730, 1/A2/1758:1760 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_87907.2 | |
| IL_4UJC_056 | 1/A2/1732:1736, 1/A2/1754:1756 | No text annotation | geometric IL_4V84_070 NA | |
| IL_4UJC_270 | 1/A2/1736:1742, 1/A2/1748:1754 | No text annotation | ||
| IL_4UJC_057 | 1/A2/1738:1742, 1/A2/1748:1752 | No text annotation | ||
| IL_4UJC_058 | 1/A2/1793:1795, 1/A2/1802:1803 | Single bulged A | homologous IL_5TBW_045 NA | |
| IL_4UJC_271 | 1/A2/1836:1838, 1/A2/1852:1854 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
| IL_4UJC_060 | 1/A2/1883:1887, 1/A2/2045:2049 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_4UJC_061 | 1/A2/1889:1898, 1/A2/2041:2043 | Isolated non-canonical cWW pair | geometric IL_5Y85_006 IL_87907.2 | |
| IL_4UJC_062 | 1/A2/1898:1900, 1/A2/2040:2041 | Multiple bulged bases | geometric IL_7Q80_003 IL_84476.1 | |
| IL_4UJC_063 | 1/A2/1904:1911, 1/A2/2031:2036 | No text annotation | homologous IL_5TBW_051 NA | |
| IL_4UJC_064 | 1/A2/1911:1922, 1/A2/2016:2031 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_4UJC_065 | 1/A2/1924:1926, 1/A2/2013:2014 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_4UJC_066 | 1/A2/2060:2063, 1/A2/2247:2250 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_85033.2 | |
| IL_4UJC_067 | 1/A2/2266:2268, 1/A2/2319:2322 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_4UJC_273 | 1/A2/2275:2277, 1/A2/2311:2312 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_4UJC_328 | 1/A2/2278:2285, 1/A2/2305:2310 | No text annotation | ||
| IL_4UJC_070 | 1/A2/2288:2290, 1/A2/2301:2302 | Single bulged A | geometric IL_4R4V_004 IL_31462.7 | |
| IL_4UJC_071 | 1/A2/2335:2342, 1/A2/3826:3832 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | geometric IL_4V9F_012 IL_59724.1 | |
| IL_4UJC_072 | 1/A2/2383:2386, 1/A2/2760:2761 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_50694.7 | |
| IL_4UJC_073 | 1/A2/2392:2396, 1/A2/2404:2406 | C-loop | geometric IL_7RQB_051 NA | |
| IL_4UJC_074 | 1/A2/2423:2427, 1/A2/2486:2491 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_4UJC_075 | 1/A2/2454:2456, 1/A2/2476:2477 | No text annotation | ||
| IL_4UJC_076 | 1/A2/2519:2521, 1/A2/2749:2751 | Isolated cWH basepair | geometric IL_3SJ2_003 IL_10167.6 | |
| IL_4UJC_077 | 1/A2/2523:2526, 1/A2/2745:2747 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_07785.1 | |
| IL_4UJC_078 | 1/A2/2566:2570, 1/A2/2729:2733 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_4UJC_079 | 1/A2/2590:2591, 1/A2/2701:2703 | Single bulged A | geometric IL_4L8H_001 IL_31462.7 | |
| IL_4UJC_080 | 1/A2/2591:2592, 1/A2/2699:2701 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_4UJC_081 | 1/A2/2622:2625, 1/A2/2662:2666 | No text annotation | ||
| IL_4UJC_082 | 1/A2/2628:2630, 1/A2/2658:2659 | Minor groove platform | geometric IL_7A0S_076 IL_51454.3 | |
| IL_4UJC_329 | 1/A2/2633:2639, 1/A2/2649:2655 | No text annotation | ||
| IL_4UJC_084 | 1/A2/2809:2815, 1/A2/3819:3822 | No text annotation | homologous IL_5TBW_074 NA | |
| IL_4UJC_085 | 1/A2/2821:2823, 1/A2/3811:3813 | Isolated tWW turn | homologous IL_5TBW_075 NA | |
| IL_4UJC_086 | 1/A2/2824:2827, 1/A2/3809:3810 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_4UJC_279 | 1/A2/2824:2832, 1/A2/3806:3810 | No text annotation | homologous IL_8P9A_305 IL_22854.4 | |
| IL_4UJC_087 | 1/A2/2827:2832, 1/A2/3806:3809 | Intercalated tWH | homologous IL_5TBW_077 NA | |
| IL_4UJC_088 | 1/A2/2844:2849, 1/A2/2854:2860 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_4UJC_089 | 1/A2/2866:2868, 1/A2/3579:3581 | Isolated non-canonical cWW pair | homologous IL_5TBW_079 NA | |
| IL_4UJC_090 | 1/A2/2873:2874, 1/A2/3571:3574 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_4UJC_091 | 1/A2/3601:3602, 1/A2/3796:3798 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_4UJC_092 | 1/A2/3629:3634, 1/A2/3646:3653 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_4UJC_093 | 1/A2/3669:3672, 1/A2/3718:3719 | Major groove intercalation | homologous IL_5TBW_084 NA | |
| IL_4UJC_094 | 1/A2/3673:3674, 1/A2/3714:3717 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_4UJC_095 | 1/A2/3677:3679, 1/A2/3710:3711 | No text annotation | ||
| IL_4UJC_096 | 1/A2/3679:3683, 1/A2/3708:3710 | No text annotation | ||
| IL_4UJC_097 | 1/A2/3684:3690, 1/A2/3701:3707 | No text annotation | homologous IL_5TBW_088 NA | |
| IL_4UJC_098 | 1/A2/3723:3724, 1/A2/3738:3740 | Single stack bend | geometric IL_4C7O_002 IL_90729.1 | |
| IL_4UJC_099 | 1/A2/3749:3750, 1/A2/3780:3783 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_4UJC_100 | 1/A2/3750:3761, 1/A2/3777:3780 | No text annotation | homologous IL_5TBW_090 NA | |
| IL_4UJC_101 | 1/A2/3864:3867, 1/A2/4523:4525 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_4UJC_102 | 1/A2/3869:3871, 1/A2/4518:4521 | Major groove platform with intercalation | homologous IL_5TBW_092 NA | |
| IL_4UJC_280 | 1/A2/3882:3884, 1/A2/4348:4349 | Single bulged U | homologous IL_8P9A_321 IL_89505.4 | |
| IL_4UJC_104 | 1/A2/3885:3886, 1/A2/4344:4347 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_4UJC_281 | 1/A2/3896:3898, 1/A2/4141:4144 | No text annotation | homologous IL_8P9A_323 IL_85599.2 | |
| IL_4UJC_106 | 1/A2/3917:3919, 1/A2/4030:4033 | No text annotation | ||
| IL_4UJC_330 | 1/A2/3917:3921, 1/A2/4028:4033 | No text annotation | ||
| IL_4UJC_107 | 1/A2/3919:3921, 1/A2/4028:4030 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_87907.2 | |
| IL_4UJC_108 | 1/A2/3923:3935, 1/A2/4023:4026 | No text annotation | ||
| IL_4UJC_109 | 1/A2/3939:3942, 1/A2/4006:4019 | No text annotation | geometric IL_1MZP_003 IL_75283.2 | |
| IL_4UJC_110 | 1/A2/4050:4059, 1/A2/4118:4124 | No text annotation | ||
| IL_4UJC_111 | 1/A2/4151:4152, 1/A2/4162:4164 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_4UJC_112 | 1/A2/4203:4205, 1/A2/4223:4227 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_4UJC_113 | 1/A2/4255:4258, 1/A2/4272:4275 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_4UJC_114 | 1/A2/4307:4310, 1/A2/4324:4325 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_4UJC_115 | 1/A2/4360:4361, 1/A2/4402:4404 | Major groove platform | homologous IL_5TBW_102 NA | |
| IL_4UJC_116 | 1/A2/4361:4363, 1/A2/4400:4402 | Isolated non-canonical cWW pair | geometric IL_5TBW_021 NA | |
| IL_4UJC_117 | 1/A2/4363:4365, 1/A2/4399:4400 | Major groove platform | geometric IL_5TBW_104 NA | |
| IL_4UJC_118 | 1/A2/4365:4367, 1/A2/4395:4399 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_4UJC_119 | 1/A2/4372:4376, 1/A2/4386:4390 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_4UJC_120 | 1/A2/4413:4414, 1/A2/4486:4488 | Major groove platform | homologous IL_5TBW_107 NA | |
| IL_4UJC_121 | 1/A2/4416:4418, 1/A2/4480:4484 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_4UJC_285 | 1/A2/4416:4419, 1/A2/4477:4484 | No text annotation | ||
| IL_4UJC_122 | 1/A2/4418:4419, 1/A2/4477:4480 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_4UJC_123 | 1/A2/4426:4428, 1/A2/4449:4451 | Isolated non-canonical cWW pair | homologous IL_8C3A_118 NA | |
| IL_4UJC_124 | 1/A2/4428:4430, 1/A2/4445:4449 | No text annotation | geometric IL_3DD2_004 IL_55516.2 | |
| IL_4UJC_125 | 1/A2/4455:4457, 1/A2/4463:4465 | Isolated cWH basepair | geometric IL_4V88_453 NA | |
| IL_4UJC_286 | 1/A2/4497:4498, 1/A2/4507:4509 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_4UJC_127 | 1/A2/4540:4545, 1/A2/4677:4682 | No text annotation | ||
| IL_4UJC_128 | 1/A2/4556:4563, 1/A2/4568:4574 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_4UJC_331 | 1/A2/4584:4589, 1/A2/4629:4633 | No text annotation | ||
| IL_4UJC_130 | 1/A2/4592:4597, 1/A2/4622:4626 | UAA/GAN related | geometric IL_5TBW_118 NA | |
| IL_4UJC_131 | 1/A2/4597:4600, 1/A2/4619:4622 | Tandem non-canonical cWW pairs | geometric IL_4WF9_109 NA | |
| IL_4UJC_289 | 1/A2/4598:4602, 1/A2/4615:4621 | No text annotation | ||
| IL_4UJC_132 | 1/A2/4600:4602, 1/A2/4615:4619 | Isolated cWS basepair | geometric IL_5TBW_047 NA | |
| IL_4UJC_290 | 1/A2/4641:4645, 1/A2/4665:4669 | UAA/GAN | homologous IL_8P9A_348 IL_38507.2 | |
| IL_4UJC_291 | 1/A2/4699:4701, 1/A2/4913:4914 | Minor groove platform | geometric IL_7A0S_076 IL_51454.3 | |
| IL_4UJC_135 | 1/A2/4702:4705, 1/A2/4909:4912 | Tandem non-canonical cWW pairs | geometric IL_1D4R_001 IL_85033.2 | |
| IL_4UJC_292 | 1/A2/4715:4725, 1/A2/4823:4832 | No text annotation | ||
| IL_4UJC_136 | 1/A2/4728:4730, 1/A2/4818:4820 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
| IL_4UJC_332 | 1/A2/4733:4736, 1/A2/4811:4815 | No text annotation | ||
| IL_4UJC_138 | 1/A2/4739:4744, 1/A2/4806:4808 | No text annotation | ||
| IL_4UJC_294 | 1/A2/4746:4747, 1/A2/4802:4804 | Multiple bulged bases | geometric IL_6JXM_001 IL_84476.1 | |
| IL_4UJC_295 | 1/A2/4840:4843, 1/A2/4886:4889 | No text annotation | geometric IL_7LYF_005 NA | |
| IL_4UJC_141 | 1/A2/4846:4851, 1/A2/4879:4883 | No text annotation | ||
| IL_4UJC_142 | 1/A2/4854:4856, 1/A2/4875:4876 | Minor groove platform | geometric IL_4V9F_075 IL_51454.3 | |
| IL_4UJC_143 | 1/A2/4923:4924, 1/A2/5018:5020 | Single bulged G | geometric IL_3SUX_001 IL_00225.14 | |
| IL_4UJC_144 | 1/A2/4927:4930, 1/A2/4938:4941 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_4UJC_145 | 1/A2/4947:4949, 1/A2/5012:5014 | No text annotation | geometric IL_3LA5_001 NA | |
| IL_4UJC_146 | 1/A2/4951:4952, 1/A2/5008:5010 | Single bulged U | homologous IL_5TBW_131 NA | |
| IL_4UJC_296 | 1/A2/4955:4957, 1/A2/5000:5005 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_4UJC_148 | 1/A2/4958:4964, 1/A2/4994:4999 | No text annotation | ||
| IL_4UJC_149 | 1/A2/4967:4969, 1/A2/4990:4991 | Single bulged U | homologous IL_5TBW_134 NA | |
| IL_4UJC_150 | 1/A2/4969:4972, 1/A2/4987:4990 | Double sheared; A in syn | geometric IL_5TBW_135 NA | |
| IL_4UJC_297 | 1/A3/64:66, 1/A3/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_07785.1 | |
| IL_4UJC_152 | 1/A3/68:69, 1/A3/88:90 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_4UJC_153 | 1/A4/1:2, 1/A4/117:119 | Single stack bend with SAM intercalation | geometric IL_2QWY_008 IL_90729.1 | |
| IL_4UJC_154 | 1/A4/15:16, 1/A4/62:64 | Multiple bulged bases | geometric IL_8C3A_142 NA | |
| IL_4UJC_155 | 1/A4/21:27, 1/A4/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_4UJC_156 | 1/A4/72:78, 1/A4/98:103 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4WF9_100 IL_16458.4 | |
| IL_4UJC_157 | 1/A4/79:81, 1/A4/95:97 | Isolated cWH basepair | geometric IL_4WZM_001 NA | |
| IL_4UJC_158 | 1/A4/82:85, 1/A4/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_4UJC_159 | 1/AC/47:49, 1/AC/114:115 | No text annotation | ||
| IL_4UJC_160 | 1/AC/52:58, 1/AC/110:111 | No text annotation | ||
| IL_4UJC_161 | 1/AC/60:62, 1/AC/105:108 | No text annotation | ||
| IL_4UJC_333 | 1/AC/61:66, 1/AC/101:107 | No text annotation | ||
| IL_4UJC_162 | 1/AC/62:67, 1/AC/100:105 | No text annotation | ||
| IL_4UJC_163 | 1/AC/67:69, 1/AC/98:100 | No text annotation | ||
| IL_4UJC_164 | 1/AC/70:75, 1/AC/91:97 | No text annotation | ||
| IL_4UJC_165 | 1/AC/135:137, 1/AC/287:289 | No text annotation | ||
| IL_4UJC_166 | 1/AC/149:150, 1/AC/242:244 | No text annotation | ||
| IL_4UJC_167 | 1/AC/255:261, 1/AC/272:277 | No text annotation | ||
| IL_4UJC_334 | 1/C1/23:25, 1/C1/649:651 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
| IL_4UJC_169 | 1/C1/34:36, 1/C1/519:521 | Stack and bulge | geometric IL_2O3X_001 IL_31737.3 | |
| IL_4UJC_300 | 1/C1/34:40, 1/C1/514:521 | No text annotation | ||
| IL_4UJC_170 | 1/C1/36:40, 1/C1/514:519 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_4UJC_171 | 1/C1/41:47, 1/C1/479:481 | No text annotation | geometric IL_4V88_387 NA | |
| IL_4UJC_172 | 1/C1/49:51, 1/C1/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_4UJC_335 | 1/C1/56:61, 1/C1/87:89 | No text annotation | ||
| IL_4UJC_174 | 1/C1/108:112, 1/C1/349:353 | No text annotation | ||
| IL_4UJC_175 | 1/C1/112:115, 1/C1/348:349 | Multiple bulged bases | geometric IL_5XWP_001 IL_82107.5 | |
| IL_4UJC_301 | 1/C1/116:121, 1/C1/343:347 | No text annotation | homologous IL_8P9A_382 IL_29223.1 | |
| IL_4UJC_177 | 1/C1/146:151, 1/C1/167:174 | No text annotation | ||
| IL_4UJC_178 | 1/C1/152:154, 1/C1/164:166 | Isolated non-canonical cWW contact | homologous IL_4V88_395 NA | |
| IL_4UJC_302 | 1/C1/187:192, 1/C1/207:212 | No text annotation | ||
| IL_4UJC_180 | 1/C1/317:319, 1/C1/332:333 | No text annotation | ||
| IL_4UJC_303 | 1/C1/317:321, 1/C1/330:333 | No text annotation | ||
| IL_4UJC_181 | 1/C1/359:364, 1/C1/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_4UJC_182 | 1/C1/366:371, 1/C1/393:394 | No text annotation | geometric IL_4ERD_001 IL_84476.1 | |
| IL_4UJC_183 | 1/C1/411:413, 1/C1/424:429 | No text annotation | ||
| IL_4UJC_184 | 1/C1/437:439, 1/C1/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_4UJC_185 | 1/C1/459:461, 1/C1/468:470 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_4UJC_186 | 1/C1/487:489, 1/C1/511:512 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_4UJC_187 | 1/C1/491:495, 1/C1/508:509 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_4UJC_188 | 1/C1/495:496, 1/C1/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_4UJC_189 | 1/C1/530:531, 1/C1/553:555 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_4UJC_336 | 1/C1/535:538, 1/C1/545:549 | No text annotation | ||
| IL_4UJC_191 | 1/C1/565:569, 1/C1/581:585 | No text annotation | ||
| IL_4UJC_192 | 1/C1/599:608, 1/C1/635:637 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_4UJC_193 | 1/C1/611:617, 1/C1/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_4UJC_194 | 1/C1/663:665, 1/C1/1162:1164 | Isolated cWH basepair | geometric IL_406D_002 IL_10167.6 | |
| IL_4UJC_195 | 1/C1/673:675, 1/C1/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_4UJC_196 | 1/C1/676:680, 1/C1/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_4UJC_197 | 1/C1/692:694, 1/C1/738:739 | Multiple bulged bases | geometric IL_7Q80_001 IL_84476.1 | |
| IL_4UJC_198 | 1/C1/752:754, 1/C1/790:791 | No text annotation | ||
| IL_4UJC_199 | 1/C1/802:803, 1/C1/860:863 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_4UJC_200 | 1/C1/804:807, 1/C1/856:859 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_77658.1 | |
| IL_4UJC_201 | 1/C1/807:815, 1/C1/849:856 | No text annotation | homologous IL_4V88_425 NA | |
| IL_4UJC_202 | 1/C1/877:879, 1/C1/907:909 | Isolated cWH basepair | homologous IL_4V88_427 NA | |
| IL_4UJC_203 | 1/C1/922:923, 1/C1/1019:1022 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_4UJC_337 | 1/C1/925:926, 1/C1/1015:1017 | No text annotation | ||
| IL_4UJC_205 | 1/C1/928:931, 1/C1/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_4V88_430 NA | |
| IL_4UJC_206 | 1/C1/931:935, 1/C1/1007:1010 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_4UJC_207 | 1/C1/942:945, 1/C1/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_4UJC_338 | 1/C1/952:956, 1/C1/967:974 | Kink-turn | geometric IL_7A0S_004 IL_94910.1 | |
| IL_4UJC_209 | 1/C1/1042:1047, 1/C1/1071:1073 | Other IL | homologous IL_4V88_435 NA | |
| IL_4UJC_210 | 1/C1/1047:1051, 1/C1/1067:1071 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_4UJC_211 | 1/C1/1091:1093, 1/C1/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_4UJC_212 | 1/C1/1098:1101, 1/C1/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_4UJC_213 | 1/C1/1101:1103, 1/C1/1129:1131 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 IL_44465.1 | |
| IL_4UJC_214 | 1/C1/1108:1110, 1/C1/1123:1124 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_4UJC_215 | 1/C1/1168:1175, 1/C1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_4UJC_305 | 1/C1/1202:1204, 1/C1/1694:1697 | No text annotation | ||
| IL_4UJC_339 | 1/C1/1206:1208, 1/C1/1691:1692 | Single bulged G | homologous IL_8P9A_430 IL_00225.14 | |
| IL_4UJC_218 | 1/C1/1213:1217, 1/C1/1681:1686 | No text annotation | ||
| IL_4UJC_219 | 1/C1/1230:1232, 1/C1/1526:1528 | Isolated non-canonical cWW pair | homologous IL_4V88_444 NA | |
| IL_4UJC_220 | 1/C1/1235:1236, 1/C1/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_4UJC_308 | 1/C1/1270:1272, 1/C1/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_4UJC_340 | 1/C1/1280:1290, 1/C1/1309:1317 | No text annotation | ||
| IL_4UJC_222 | 1/C1/1281:1290, 1/C1/1309:1316 | No text annotation | ||
| IL_4UJC_223 | 1/C1/1291:1293, 1/C1/1306:1308 | No text annotation | homologous IL_4V88_448 NA | |
| IL_4UJC_224 | 1/C1/1325:1327, 1/C1/1502:1503 | Single bulged U | homologous IL_4V88_449 NA | |
| IL_4UJC_311 | 1/C1/1329:1332, 1/C1/1499:1500 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.5 | |
| IL_4UJC_226 | 1/C1/1333:1335, 1/C1/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_4UJC_227 | 1/C1/1337:1338, 1/C1/1488:1490 | Single bulged A | homologous IL_4V88_452 NA | |
| IL_4UJC_228 | 1/C1/1347:1349, 1/C1/1380:1382 | Isolated cWH basepair | homologous IL_4V88_453 NA | |
| IL_4UJC_229 | 1/C1/1395:1397, 1/C1/1448:1450 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_44465.1 | |
| IL_4UJC_230 | 1/C1/1397:1399, 1/C1/1447:1448 | No text annotation | ||
| IL_4UJC_312 | 1/C1/1401:1405, 1/C1/1441:1445 | No text annotation | ||
| IL_4UJC_232 | 1/C1/1408:1413, 1/C1/1433:1438 | No text annotation | ||
| IL_4UJC_313 | 1/C1/1415:1418, 1/C1/1429:1431 | No text annotation | ||
| IL_4UJC_234 | 1/C1/1537:1539, 1/C1/1594:1596 | Isolated non-canonical cWW pair | geometric IL_6OL3_002 IL_87907.2 | |
| IL_4UJC_315 | 1/C1/1541:1550, 1/C1/1582:1592 | No text annotation | ||
| IL_4UJC_235 | 1/C1/1550:1558, 1/C1/1577:1582 | No text annotation | ||
| IL_4UJC_341 | 1/C1/1560:1562, 1/C1/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8CRE_464 IL_07785.1 | |
| IL_4UJC_237 | 1/C1/1604:1610, 1/C1/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_4UJC_238 | 1/C1/1700:1702, 1/C1/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_4UJC_239 | 1/C1/1702:1705, 1/C1/1829:1833 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4UJC_240 | 1/C1/1706:1708, 1/C1/1826:1828 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_4UJC_241 | 1/C1/1708:1711, 1/C1/1822:1826 | Non canonical cWW and near pair | homologous IL_4V88_466 NA | |
| IL_4UJC_316 | 1/C1/1714:1716, 1/C1/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_4UJC_243 | 1/C1/1717:1720, 1/C1/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_4UJC_244 | 1/C1/1720:1722, 1/C1/1812:1813 | No text annotation | ||
| IL_4UJC_245 | 1/C1/1729:1731, 1/C1/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_4UJC_246 | 1/C1/1733:1736, 1/C1/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_4UJC_247 | 1/C1/1739:1742, 1/C1/1792:1795 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_4UJC_317 | 1/C1/1742:1746, 1/C1/1788:1792 | Triple sheared | homologous IL_8C3A_480 NA | |
| IL_4UJC_249 | 1/C1/1750:1752, 1/C1/1780:1784 | No text annotation | homologous IL_4V88_475 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4UJC_250 | No text annotation | ||
| IL_4UJC_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4UJC_252 | No text annotation | ||
| IL_4UJC_007 | Isolated non-canonical cWW pair | ||
| IL_4UJC_253 | Isolated non-canonical cWW pair | ||
| IL_4UJC_014 | No text annotation | ||
| IL_4UJC_255 | No text annotation | ||
| IL_4UJC_256 | Isolated non-canonical cWW pair | ||
| IL_4UJC_015 | No text annotation | ||
| IL_4UJC_017 | No text annotation | ||
| IL_4UJC_020 | No text annotation | ||
| IL_4UJC_258 | No text annotation | ||
| IL_4UJC_259 | No text annotation | ||
| IL_4UJC_026 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_261 | Isolated non-canonical cWW pair | ||
| IL_4UJC_262 | Isolated non-canonical cWW pair | ||
| IL_4UJC_263 | No text annotation | ||
| IL_4UJC_036 | No text annotation | ||
| IL_4UJC_037 | No text annotation | ||
| IL_4UJC_265 | No text annotation | ||
| IL_4UJC_267 | Triple sheared with non-canonical cWW | ||
| IL_4UJC_049 | Multiple bulged bases | ||
| IL_4UJC_053 | No text annotation | ||
| IL_4UJC_055 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_059 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_272 | Partly complementary | ||
| IL_4UJC_068 | Isolated non-canonical cWW pair | ||
| IL_4UJC_069 | No text annotation | ||
| IL_4UJC_274 | No text annotation | ||
| IL_4UJC_275 | No text annotation | ||
| IL_4UJC_276 | Partly complementary | ||
| IL_4UJC_277 | No text annotation | ||
| IL_4UJC_278 | No text annotation | ||
| IL_4UJC_083 | No text annotation | ||
| IL_4UJC_103 | Isolated non-canonical cWW pair | ||
| IL_4UJC_105 | No text annotation | ||
| IL_4UJC_282 | No text annotation | ||
| IL_4UJC_283 | No text annotation | ||
| IL_4UJC_284 | No text annotation | ||
| IL_4UJC_126 | No text annotation | ||
| IL_4UJC_287 | No text annotation | ||
| IL_4UJC_129 | No text annotation | ||
| IL_4UJC_288 | No text annotation | ||
| IL_4UJC_133 | UAA/GAN with extra cWW | ||
| IL_4UJC_134 | No text annotation | ||
| IL_4UJC_293 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_137 | No text annotation | ||
| IL_4UJC_139 | Isolated non-canonical cWW pair | ||
| IL_4UJC_140 | No text annotation | ||
| IL_4UJC_147 | No text annotation | ||
| IL_4UJC_151 | No text annotation | ||
| IL_4UJC_298 | No text annotation | ||
| IL_4UJC_299 | No text annotation | ||
| IL_4UJC_168 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_173 | No text annotation | ||
| IL_4UJC_176 | No text annotation | ||
| IL_4UJC_179 | No text annotation | ||
| IL_4UJC_190 | No text annotation | ||
| IL_4UJC_304 | Isolated non-canonical cWW pair | ||
| IL_4UJC_204 | Isolated non-canonical cWW pair | ||
| IL_4UJC_208 | Kink-turn related | ||
| IL_4UJC_216 | No text annotation | ||
| IL_4UJC_217 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_306 | No text annotation | ||
| IL_4UJC_307 | No text annotation | ||
| IL_4UJC_221 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_309 | No text annotation | ||
| IL_4UJC_310 | No text annotation | ||
| IL_4UJC_225 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_231 | No text annotation | ||
| IL_4UJC_233 | No text annotation | ||
| IL_4UJC_314 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_236 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_242 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_248 | No text annotation | ||
| IL_4UJC_318 | Partly complementary |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4UJC_028 | 1/A2/342:358, 1/A2/365:370, 1/A3/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_4UJC_001 | 1/A2/371:378, 1/A2/405:406, 1/A3/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_4UJC_050 | 1/A2/371:378, 1/A2/405:412, 1/A3/13:20 | No text annotation | ||
| J3_4UJC_051 | 1/A2/371:384, 1/A2/389:412, 1/A3/13:20 | No text annotation | ||
| J3_4UJC_052 | 1/A2/433:446, 1/A2/689:692, 1/A2/1273:1285 | No text annotation | ||
| J3_4UJC_053 | 1/A2/697:701, 1/A2/939:956, 1/A2/1257:1268 | No text annotation | ||
| J3_4UJC_033 | 1/A2/958:969, 1/A2/1215:1225, 1/A2/1245:1255 | No text annotation | ||
| J3_4UJC_002 | 1/A2/963:969, 1/A2/1215:1223, 1/A2/1246:1251 | No text annotation | ||
| J3_4UJC_003 | 1/A2/970:977, 1/A2/1052:1057, 1/A2/1203:1214 | No text annotation | ||
| J3_4UJC_054 | 1/A2/971:975, 1/A2/1054:1059, 1/A2/1201:1213 | No text annotation | ||
| J3_4UJC_055 | 1/A2/1081:1088, 1/A2/1145:1148, 1/A2/1173:1174 | No text annotation | ||
| J3_4UJC_005 | 1/A2/1510:1516, 1/A2/1601:1603, 1/A2/1619:1622 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_4UJC_006 | 1/A2/1524:1527, 1/A2/1559:1563, 1/A2/1588:1593 | No text annotation | homologous J3_5TBW_005 NA | |
| J3_4UJC_056 | 1/A2/1705:1706, 1/A2/1781:1786, 1/A2/1810:1815 | No text annotation | ||
| J3_4UJC_007 | 1/A2/2370:2376, 1/A2/2782:2784, 1/A2/2796:2799 | No text annotation | homologous J3_5TBW_008 NA | |
| J3_4UJC_008 | 1/A2/2379:2382, 1/A2/2762:2768, 1/A2/2777:2779 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_4UJC_037 | 1/A2/2417:2422, 1/A2/2492:2496, 1/A2/2513:2514 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_4UJC_057 | 1/A2/2427:2433, 1/A2/2442:2456, 1/A2/2476:2486 | No text annotation | ||
| J3_4UJC_058 | 1/A2/2523:2531, 1/A2/2550:2552, 1/A2/2734:2747 | No text annotation | ||
| J3_4UJC_009 | 1/A2/2526:2533, 1/A2/2548:2552, 1/A2/2734:2745 | No text annotation | ||
| J3_4UJC_010 | 1/A2/2552:2553, 1/A2/2562:2566, 1/A2/2733:2734 | No text annotation | ||
| J3_4UJC_059 | 1/A2/2575:2579, 1/A2/2714:2715, 1/A2/2719:2724 | No text annotation | homologous J3_8CRE_018 J3_12393.2 | |
| J3_4UJC_011 | 1/A2/3905:3908, 1/A2/4042:4047, 1/A2/4127:4134 | No text annotation | homologous J3_5TBW_012 NA | |
| J3_4UJC_042 | 1/A2/4050:4065, 1/A2/4079:4096, 1/A2/4115:4124 | No text annotation | ||
| J3_4UJC_012 | 1/A2/4201:4203, 1/A2/4227:4229, 1/A2/4238:4243 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_4UJC_043 | 1/A2/4201:4205, 1/A2/4223:4229, 1/A2/4238:4243 | No text annotation | ||
| J3_4UJC_013 | 1/A2/4423:4426, 1/A2/4451:4453, 1/A2/4467:4473 | No text annotation | homologous J3_5TBW_014 NA | |
| J3_4UJC_044 | 1/A2/4708:4713, 1/A2/4834:4839, 1/A2/4890:4906 | No text annotation | ||
| J3_4UJC_014 | 1/A2/4925:4927, 1/A2/4941:4947, 1/A2/5014:5017 | No text annotation | geometric J3_5TBW_069 NA | |
| J3_4UJC_045 | 1/A2/4925:4930, 1/A2/4938:4947, 1/A2/5014:5017 | No text annotation | ||
| J3_4UJC_015 | 1/A3/44:45, 1/A3/58:64, 1/A3/95:99 | No text annotation | homologous J3_8P4V_024 NA | |
| J3_4UJC_016 | 1/A4/8:15, 1/A4/64:67, 1/A4/108:111 | No text annotation | ||
| J3_4UJC_060 | 1/AC/140:141, 1/AC/252:253, 1/AC/279:284 | No text annotation | ||
| J3_4UJC_018 | 1/C1/40:41, 1/C1/481:487, 1/C1/512:514 | No text annotation | homologous J3_8P9A_068 J3_67856.4 | |
| J3_4UJC_019 | 1/C1/681:684, 1/C1/918:922, 1/C1/1022:1024 | No text annotation | ||
| J3_4UJC_020 | 1/C1/816:819, 1/C1/829:831, 1/C1/843:848 | No text annotation | geometric J3_4V88_032 NA | |
| J3_4UJC_021 | 1/C1/938:941, 1/C1/985:993, 1/C1/1000:1004 | No text annotation | homologous J3_4V88_033 NA | |
| J3_4UJC_047 | 1/C1/1094:1096, 1/C1/1136:1140, 1/C1/1147:1151 | No text annotation | homologous J3_8P9A_075 J3_94999.1 | |
| J3_4UJC_023 | 1/C1/1218:1221, 1/C1/1645:1651, 1/C1/1673:1680 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_4UJC_024 | 1/C1/1237:1245, 1/C1/1254:1266, 1/C1/1516:1520 | No text annotation | ||
| J3_4UJC_025 | 1/C1/1272:1277, 1/C1/1320:1324, 1/C1/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_4UJC_026 | 1/C1/1340:1345, 1/C1/1384:1389, 1/C1/1481:1486 | No text annotation | homologous J3_4V88_039 NA | |
| J3_4UJC_027 | 1/C1/1350:1351, 1/C1/1360:1365, 1/C1/1374:1379 | No text annotation | ||
| J3_4UJC_049 | 1/C1/1391:1395, 1/C1/1450:1456, 1/C1/1470:1479 | No text annotation | ||
| J4_4UJC_016 | 1/A2/192:198, 1/A2/211:219, 1/A2/223:225, 1/A2/237:243 | No text annotation | ||
| J4_4UJC_002 | 1/A2/2342:2348, 1/A2/2366:2368, 1/A2/2801:2806, 1/A2/3825:3826 | No text annotation | ||
| J4_4UJC_003 | 1/A2/2383:2387, 1/A2/2411:2416, 1/A2/2515:2516, 1/A2/2754:2761 | No text annotation | ||
| J4_4UJC_004 | 1/A2/2386:2387, 1/A2/2411:2416, 1/A2/2515:2516, 1/A2/2754:2760 | No text annotation | ||
| J4_4UJC_017 | 1/A2/2595:2596, 1/A2/2614:2625, 1/A2/2662:2675, 1/A2/2695:2696 | No text annotation | ||
| J4_4UJC_006 | 1/A2/3603:3607, 1/A2/3619:3623, 1/A2/3659:3663, 1/A2/3790:3795 | No text annotation | homologous J4_8P9A_017 J4_07509.2 | |
| J4_4UJC_007 | 1/A2/3665:3667, 1/A2/3721:3723, 1/A2/3740:3749, 1/A2/3783:3788 | No text annotation | ||
| J4_4UJC_008 | 1/A2/4191:4195, 1/A2/4249:4253, 1/A2/4277:4279, 1/A2/4288:4290 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_4UJC_009 | 1/A2/4547:4552, 1/A2/4578:4581, 1/A2/4636:4638, 1/A2/4672:4675 | No text annotation | ||
| J4_4UJC_010 | 1/AA/4:10, 1/AA/25:27, 1/AA/43:49, 1/AA/65:69 | No text annotation | homologous J4_6GSL_030 NA | |
| J4_4UJC_011 | 1/AC/133:134, 1/AC/290:291, 1/AC/302:303, 1/AC/314:315 | No text annotation | ||
| J4_4UJC_012 | 1/AC/153:156, 1/AC/171:172, 1/AC/227:229, 1/AC/238:239 | No text annotation | ||
| J4_4UJC_013 | 1/C1/98:106, 1/C1/355:357, 1/C1/405:410, 1/C1/430:432 | No text annotation | ||
| J4_4UJC_014 | 1/C1/665:673, 1/C1/1032:1037, 1/C1/1078:1089, 1/C1/1160:1162 | No text annotation | ||
| J4_4UJC_015 | 1/C1/1225:1228, 1/C1/1530:1536, 1/C1/1597:1610, 1/C1/1629:1641 | No text annotation | ||
| J5_4UJC_001 | 1/A2/111:125, 1/A2/143:157, 1/A2/266:274, 1/A2/295:301, 1/A2/318:321 | No text annotation | ||
| J5_4UJC_002 | 1/A2/1315:1320, 1/A2/1495:1498, 1/A2/1637:1640, 1/A2/2264:2266, 1/A2/2322:2328 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_4UJC_003 | 1/A2/2832:2840, 1/A2/2864:2865, 1/A2/3582:3583, 1/A2/3587:3595, 1/A2/3804:3806 | No text annotation | homologous J5_8P9A_013 J5_62523.6 | |
| J5_4UJC_008 | 1/A2/3872:3879, 1/A2/4352:4363, 1/A2/4400:4412, 1/A2/4489:4494, 1/A2/4512:4517 | No text annotation | ||
| J5_4UJC_005 | 1/C1/30:34, 1/C1/521:528, 1/C1/557:565, 1/C1/585:595, 1/C1/641:644 | No text annotation | ||
| J5_4UJC_006 | 1/C1/53:56, 1/C1/89:96, 1/C1/434:436, 1/C1/457:459, 1/C1/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_4UJC_009 | 1/C1/123:146, 1/C1/174:186, 1/C1/213:219, 1/C1/302:316, 1/C1/334:341 | No text annotation | ||
| J6_4UJC_005 | 1/A2/1332:1335, 1/A2/1364:1368, 1/A2/1375:1379, 1/A2/1398:1401, 1/A2/1443:1445, 1/A2/1478:1483 | No text annotation | ||
| J6_4UJC_006 | 1/A2/3889:3892, 1/A2/4148:4151, 1/A2/4164:4165, 1/A2/4187:4190, 1/A2/4291:4302, 1/A2/4330:4341 | No text annotation | ||
| J6_4UJC_007 | 1/C1/682:694, 1/C1/738:749, 1/C1/794:807, 1/C1/856:877, 1/C1/909:922, 1/C1/1022:1023 | No text annotation | ||
| J6_4UJC_008 | 1/C1/682:694, 1/C1/738:749, 1/C1/794:807, 1/C1/856:877, 1/C1/909:923, 1/C1/1019:1023 | No text annotation | ||
| J7_4UJC_001 | 1/A2/1645:1652, 1/A2/1661:1664, 1/A2/1830:1833, 1/A2/1857:1862, 1/A2/1873:1877, 1/A2/2055:2056, 1/A2/2254:2259 | No text annotation | ||
| J9_4UJC_002 | 1/A2/19:27, 1/A2/55:67, 1/A2/74:78, 1/A2/105:109, 1/A2/323:335, 1/A3/30:42, 1/A3/101:106, 1/A3/113:114, 1/A3/136:138 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4UJC_029 | No text annotation | ||
| J3_4UJC_030 | No text annotation | ||
| J3_4UJC_031 | No text annotation | ||
| J3_4UJC_032 | No text annotation | ||
| J3_4UJC_034 | No text annotation | ||
| J3_4UJC_004 | No text annotation | ||
| J3_4UJC_035 | No text annotation | ||
| J3_4UJC_036 | No text annotation | ||
| J3_4UJC_038 | No text annotation | ||
| J3_4UJC_039 | No text annotation | ||
| J3_4UJC_040 | No text annotation | ||
| J3_4UJC_041 | No text annotation | ||
| J3_4UJC_017 | No text annotation | ||
| J3_4UJC_046 | No text annotation | ||
| J3_4UJC_022 | No text annotation | ||
| J3_4UJC_048 | No text annotation | ||
| J4_4UJC_001 | No text annotation | ||
| J4_4UJC_005 | No text annotation | ||
| J5_4UJC_004 | No text annotation | ||
| J5_4UJC_007 | No text annotation | ||
| J6_4UJC_001 | No text annotation | ||
| J6_4UJC_002 | No text annotation | ||
| J6_4UJC_003 | No text annotation | ||
| J6_4UJC_004 | No text annotation | ||
| J9_4UJC_001 | No text annotation |
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