4UJC Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4UJC_001 | No text annotation | ||
| HL_4UJC_002 | No text annotation | ||
| HL_4UJC_003 | No text annotation | ||
| HL_4UJC_004 | No text annotation | ||
| HL_4UJC_005 | No text annotation | ||
| HL_4UJC_122 | T-loop with 1 bulged base | ||
| HL_4UJC_006 | No text annotation | ||
| HL_4UJC_007 | T-loop with unstacked turn | ||
| HL_4UJC_008 | No text annotation | ||
| HL_4UJC_123 | T-loop related | ||
| HL_4UJC_009 | Pseudoknot geometry | ||
| HL_4UJC_010 | GNRA | ||
| HL_4UJC_011 | No text annotation | ||
| HL_4UJC_012 | No text annotation | ||
| HL_4UJC_124 | No text annotation | ||
| HL_4UJC_013 | No text annotation | ||
| HL_4UJC_014 | T-loop with 2 stacked bulged bases | ||
| HL_4UJC_015 | No text annotation | ||
| HL_4UJC_125 | No text annotation | ||
| HL_4UJC_016 | GNRA | ||
| HL_4UJC_017 | No text annotation | ||
| HL_4UJC_018 | No text annotation | ||
| HL_4UJC_019 | No text annotation | ||
| HL_4UJC_137 | No text annotation | ||
| HL_4UJC_020 | No text annotation | ||
| HL_4UJC_021 | No text annotation | ||
| HL_4UJC_022 | No text annotation | ||
| HL_4UJC_023 | Externally structured | ||
| HL_4UJC_024 | No text annotation | ||
| HL_4UJC_025 | No text annotation | ||
| HL_4UJC_026 | GNRA | ||
| HL_4UJC_027 | No text annotation | ||
| HL_4UJC_028 | No text annotation | ||
| HL_4UJC_029 | No text annotation | ||
| HL_4UJC_030 | GNRA | ||
| HL_4UJC_031 | T-loop with 2 stacked bulged bases | ||
| HL_4UJC_032 | No text annotation | ||
| HL_4UJC_138 | Pseudoknot geometry with 3' bulge | ||
| HL_4UJC_033 | GNRA variation | ||
| HL_4UJC_034 | No text annotation | ||
| HL_4UJC_139 | Mini UNCG | ||
| HL_4UJC_035 | No text annotation | ||
| HL_4UJC_036 | No text annotation | ||
| HL_4UJC_037 | GNRA | ||
| HL_4UJC_038 | No text annotation | ||
| HL_4UJC_039 | No text annotation | ||
| HL_4UJC_040 | No text annotation | ||
| HL_4UJC_041 | No text annotation | ||
| HL_4UJC_042 | No text annotation | ||
| HL_4UJC_043 | GNRA | ||
| HL_4UJC_044 | UNCG | ||
| HL_4UJC_045 | No text annotation | ||
| HL_4UJC_046 | No text annotation | ||
| HL_4UJC_047 | No text annotation | ||
| HL_4UJC_048 | GNRA | ||
| HL_4UJC_049 | GNRA | ||
| HL_4UJC_050 | No text annotation | ||
| HL_4UJC_051 | No text annotation | ||
| HL_4UJC_052 | No text annotation | ||
| HL_4UJC_053 | No text annotation | ||
| HL_4UJC_140 | No text annotation | ||
| HL_4UJC_054 | No text annotation | ||
| HL_4UJC_055 | No text annotation | ||
| HL_4UJC_056 | No text annotation | ||
| HL_4UJC_057 | No text annotation | ||
| HL_4UJC_058 | Pseudoknot geometry | ||
| HL_4UJC_059 | No text annotation | ||
| HL_4UJC_060 | GNRA with extra cWW | ||
| HL_4UJC_126 | GNRA | ||
| HL_4UJC_061 | No text annotation | ||
| HL_4UJC_062 | No text annotation | ||
| HL_4UJC_063 | No text annotation | ||
| HL_4UJC_141 | GNRA variation | ||
| HL_4UJC_064 | No text annotation | ||
| HL_4UJC_065 | GNRA | ||
| HL_4UJC_066 | GNRA | ||
| HL_4UJC_067 | Ribsomal LSU H95 | ||
| HL_4UJC_068 | No text annotation | ||
| HL_4UJC_127 | No text annotation | ||
| HL_4UJC_069 | No text annotation | ||
| HL_4UJC_070 | No text annotation | ||
| HL_4UJC_071 | No text annotation | ||
| HL_4UJC_142 | No text annotation | ||
| HL_4UJC_072 | Pseudoknot with intercalation | ||
| HL_4UJC_073 | No text annotation | ||
| HL_4UJC_128 | No text annotation | ||
| HL_4UJC_074 | No text annotation | ||
| HL_4UJC_075 | No text annotation | ||
| HL_4UJC_076 | No text annotation | ||
| HL_4UJC_077 | GNRA | ||
| HL_4UJC_078 | tRNA D-loop | ||
| HL_4UJC_079 | tRNA anticodon loop | ||
| HL_4UJC_080 | T-loop with 2 stacked bulged bases | ||
| HL_4UJC_081 | No text annotation | ||
| HL_4UJC_082 | No text annotation | ||
| HL_4UJC_083 | No text annotation | ||
| HL_4UJC_084 | No text annotation | ||
| HL_4UJC_085 | No text annotation | ||
| HL_4UJC_086 | No text annotation | ||
| HL_4UJC_129 | No text annotation | ||
| HL_4UJC_087 | No text annotation | ||
| HL_4UJC_088 | No text annotation | ||
| HL_4UJC_089 | No text annotation | ||
| HL_4UJC_090 | GNRA related | ||
| HL_4UJC_091 | No text annotation | ||
| HL_4UJC_130 | No text annotation | ||
| HL_4UJC_092 | No text annotation | ||
| HL_4UJC_093 | T-loop with 2 stacked bulged bases | ||
| HL_4UJC_094 | No text annotation | ||
| HL_4UJC_095 | No text annotation | ||
| HL_4UJC_096 | No text annotation | ||
| HL_4UJC_097 | UNCG | ||
| HL_4UJC_098 | No text annotation | ||
| HL_4UJC_099 | No text annotation | ||
| HL_4UJC_131 | No text annotation | ||
| HL_4UJC_143 | No text annotation | ||
| HL_4UJC_100 | No text annotation | ||
| HL_4UJC_101 | GNRA variation | ||
| HL_4UJC_102 | No text annotation | ||
| HL_4UJC_103 | No text annotation | ||
| HL_4UJC_104 | No text annotation | ||
| HL_4UJC_144 | No text annotation | ||
| HL_4UJC_105 | No text annotation | ||
| HL_4UJC_106 | GNRA | ||
| HL_4UJC_132 | No text annotation | ||
| HL_4UJC_107 | No text annotation | ||
| HL_4UJC_133 | No text annotation | ||
| HL_4UJC_108 | No text annotation | ||
| HL_4UJC_145 | No text annotation | ||
| HL_4UJC_109 | GNRA | ||
| HL_4UJC_110 | GNRA | ||
| HL_4UJC_111 | No text annotation | ||
| HL_4UJC_112 | No text annotation | ||
| HL_4UJC_146 | GNRA wlth extra near cWW | ||
| HL_4UJC_134 | GNRA with extra cWW | ||
| HL_4UJC_113 | GNRA | ||
| HL_4UJC_114 | No text annotation | ||
| HL_4UJC_115 | No text annotation | ||
| HL_4UJC_116 | tRNA anticodon loop | ||
| HL_4UJC_135 | GNRA | ||
| HL_4UJC_117 | GNRA | ||
| HL_4UJC_118 | No text annotation | ||
| HL_4UJC_119 | No text annotation | ||
| HL_4UJC_136 | No text annotation | ||
| HL_4UJC_120 | GNRA | ||
| HL_4UJC_121 | GNRA variation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4UJC_226 | 1/C1/1333:1335, 1/C1/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4UJC_001 | No text annotation | ||
| IL_4UJC_250 | No text annotation | ||
| IL_4UJC_319 | No text annotation | ||
| IL_4UJC_002 | Other IL | ||
| IL_4UJC_003 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_004 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4UJC_251 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4UJC_005 | No text annotation | ||
| IL_4UJC_252 | No text annotation | ||
| IL_4UJC_320 | No text annotation | ||
| IL_4UJC_006 | Minor groove platform | ||
| IL_4UJC_007 | Isolated non-canonical cWW pair | ||
| IL_4UJC_321 | No text annotation | ||
| IL_4UJC_253 | Isolated non-canonical cWW pair | ||
| IL_4UJC_008 | Single bulged A | ||
| IL_4UJC_009 | No text annotation | ||
| IL_4UJC_254 | No text annotation | ||
| IL_4UJC_010 | Single stack bend | ||
| IL_4UJC_011 | Triple sheared with non-canonical cWW | ||
| IL_4UJC_012 | No text annotation | ||
| IL_4UJC_013 | Isolated non-canonical cWW pair | ||
| IL_4UJC_014 | No text annotation | ||
| IL_4UJC_322 | No text annotation | ||
| IL_4UJC_255 | No text annotation | ||
| IL_4UJC_256 | Isolated non-canonical cWW pair | ||
| IL_4UJC_323 | No text annotation | ||
| IL_4UJC_015 | No text annotation | ||
| IL_4UJC_016 | No text annotation | ||
| IL_4UJC_324 | No text annotation | ||
| IL_4UJC_017 | No text annotation | ||
| IL_4UJC_018 | Isolated non-canonical cWW pair | ||
| IL_4UJC_019 | Isolated non-canonical cWW pair | ||
| IL_4UJC_020 | No text annotation | ||
| IL_4UJC_257 | No text annotation | ||
| IL_4UJC_325 | No text annotation | ||
| IL_4UJC_258 | No text annotation | ||
| IL_4UJC_021 | No text annotation | ||
| IL_4UJC_022 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_023 | No text annotation | ||
| IL_4UJC_024 | Isolated non-canonical cWW pair | ||
| IL_4UJC_259 | No text annotation | ||
| IL_4UJC_025 | No text annotation | ||
| IL_4UJC_026 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_260 | Multiple bulged bases | ||
| IL_4UJC_027 | Multiple bulged bases | ||
| IL_4UJC_028 | No text annotation | ||
| IL_4UJC_029 | No text annotation | ||
| IL_4UJC_261 | Isolated non-canonical cWW pair | ||
| IL_4UJC_030 | Multiple bulged bases | ||
| IL_4UJC_031 | No text annotation | ||
| IL_4UJC_262 | Isolated non-canonical cWW pair | ||
| IL_4UJC_032 | No text annotation | ||
| IL_4UJC_263 | No text annotation | ||
| IL_4UJC_033 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_034 | Isolated non-canonical cWW pair | ||
| IL_4UJC_035 | No text annotation | ||
| IL_4UJC_036 | No text annotation | ||
| IL_4UJC_326 | No text annotation | ||
| IL_4UJC_264 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_037 | No text annotation | ||
| IL_4UJC_038 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_039 | Single bulged A | ||
| IL_4UJC_265 | No text annotation | ||
| IL_4UJC_040 | Minor groove platform | ||
| IL_4UJC_041 | Isolated non-canonical cWW pair | ||
| IL_4UJC_266 | No text annotation | ||
| IL_4UJC_042 | No text annotation | ||
| IL_4UJC_267 | Triple sheared with non-canonical cWW | ||
| IL_4UJC_043 | No text annotation | ||
| IL_4UJC_044 | Major groove platform with extra cWW | ||
| IL_4UJC_045 | Single bulged U | ||
| IL_4UJC_046 | No text annotation | ||
| IL_4UJC_047 | Isolated non-canonical cWW pair | ||
| IL_4UJC_048 | No text annotation | ||
| IL_4UJC_049 | Multiple bulged bases | ||
| IL_4UJC_050 | Single bulged G | ||
| IL_4UJC_051 | No text annotation | ||
| IL_4UJC_268 | No text annotation | ||
| IL_4UJC_052 | Minor groove platform | ||
| IL_4UJC_327 | C-loop with bulged stacked A's | ||
| IL_4UJC_053 | No text annotation | ||
| IL_4UJC_054 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_269 | Isolated non-canonical cWW pair | ||
| IL_4UJC_055 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_056 | No text annotation | ||
| IL_4UJC_270 | No text annotation | ||
| IL_4UJC_057 | No text annotation | ||
| IL_4UJC_058 | Single bulged A | ||
| IL_4UJC_059 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_271 | Isolated non-canonical cWW pair | ||
| IL_4UJC_060 | UAA/GAN | ||
| IL_4UJC_061 | Isolated non-canonical cWW pair | ||
| IL_4UJC_062 | Multiple bulged bases | ||
| IL_4UJC_272 | Partly complementary | ||
| IL_4UJC_063 | No text annotation | ||
| IL_4UJC_064 | No text annotation | ||
| IL_4UJC_065 | Single bulged U | ||
| IL_4UJC_066 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_067 | Isolated cWS basepair | ||
| IL_4UJC_068 | Isolated non-canonical cWW pair | ||
| IL_4UJC_273 | Single bulged A | ||
| IL_4UJC_069 | No text annotation | ||
| IL_4UJC_328 | No text annotation | ||
| IL_4UJC_274 | No text annotation | ||
| IL_4UJC_070 | Single bulged A | ||
| IL_4UJC_071 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_4UJC_072 | Major groove platform; stack outside cWW | ||
| IL_4UJC_275 | No text annotation | ||
| IL_4UJC_073 | C-loop | ||
| IL_4UJC_074 | UAA/GAN | ||
| IL_4UJC_075 | No text annotation | ||
| IL_4UJC_276 | Partly complementary | ||
| IL_4UJC_076 | Isolated cWH basepair | ||
| IL_4UJC_077 | Isolated non-canonical cWW pair | ||
| IL_4UJC_078 | Triple sheared | ||
| IL_4UJC_079 | Single bulged A | ||
| IL_4UJC_080 | Single stack bend | ||
| IL_4UJC_081 | No text annotation | ||
| IL_4UJC_277 | No text annotation | ||
| IL_4UJC_082 | Minor groove platform | ||
| IL_4UJC_278 | No text annotation | ||
| IL_4UJC_329 | No text annotation | ||
| IL_4UJC_083 | No text annotation | ||
| IL_4UJC_084 | No text annotation | ||
| IL_4UJC_085 | Isolated tWW turn | ||
| IL_4UJC_086 | Major groove platform; stack outside cWW | ||
| IL_4UJC_279 | No text annotation | ||
| IL_4UJC_087 | Intercalated tWH | ||
| IL_4UJC_088 | tSH-tSH-tHH-tHS | ||
| IL_4UJC_089 | Isolated non-canonical cWW pair | ||
| IL_4UJC_090 | No text annotation | ||
| IL_4UJC_091 | Single bulged A | ||
| IL_4UJC_092 | Kink-turn related | ||
| IL_4UJC_093 | Major groove intercalation | ||
| IL_4UJC_094 | Multiple bulged bases | ||
| IL_4UJC_095 | No text annotation | ||
| IL_4UJC_096 | No text annotation | ||
| IL_4UJC_097 | No text annotation | ||
| IL_4UJC_098 | Single stack bend | ||
| IL_4UJC_099 | No text annotation | ||
| IL_4UJC_100 | No text annotation | ||
| IL_4UJC_101 | No text annotation | ||
| IL_4UJC_102 | Major groove platform with intercalation | ||
| IL_4UJC_280 | Single bulged U | ||
| IL_4UJC_103 | Isolated non-canonical cWW pair | ||
| IL_4UJC_104 | Minor groove platform | ||
| IL_4UJC_105 | No text annotation | ||
| IL_4UJC_281 | No text annotation | ||
| IL_4UJC_106 | No text annotation | ||
| IL_4UJC_330 | No text annotation | ||
| IL_4UJC_282 | No text annotation | ||
| IL_4UJC_107 | Isolated non-canonical cWW pair | ||
| IL_4UJC_108 | No text annotation | ||
| IL_4UJC_283 | No text annotation | ||
| IL_4UJC_284 | No text annotation | ||
| IL_4UJC_109 | No text annotation | ||
| IL_4UJC_110 | No text annotation | ||
| IL_4UJC_111 | Single bulged A | ||
| IL_4UJC_112 | Isolated tHS basepair with bulges | ||
| IL_4UJC_113 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_114 | Single stack bend | ||
| IL_4UJC_115 | Major groove platform | ||
| IL_4UJC_116 | Isolated non-canonical cWW pair | ||
| IL_4UJC_117 | Major groove platform | ||
| IL_4UJC_118 | Major groove minor groove platform with extra cWW | ||
| IL_4UJC_119 | No text annotation | ||
| IL_4UJC_120 | Major groove platform | ||
| IL_4UJC_121 | No text annotation | ||
| IL_4UJC_285 | No text annotation | ||
| IL_4UJC_122 | Multiple bulged bases | ||
| IL_4UJC_123 | Isolated non-canonical cWW pair | ||
| IL_4UJC_124 | No text annotation | ||
| IL_4UJC_125 | Isolated cWH basepair | ||
| IL_4UJC_286 | Single bulged A | ||
| IL_4UJC_126 | No text annotation | ||
| IL_4UJC_287 | No text annotation | ||
| IL_4UJC_127 | No text annotation | ||
| IL_4UJC_128 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4UJC_129 | No text annotation | ||
| IL_4UJC_331 | No text annotation | ||
| IL_4UJC_288 | No text annotation | ||
| IL_4UJC_130 | UAA/GAN related | ||
| IL_4UJC_131 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_289 | No text annotation | ||
| IL_4UJC_132 | Isolated cWS basepair | ||
| IL_4UJC_133 | UAA/GAN with extra cWW | ||
| IL_4UJC_290 | UAA/GAN | ||
| IL_4UJC_134 | No text annotation | ||
| IL_4UJC_291 | Minor groove platform | ||
| IL_4UJC_135 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_292 | No text annotation | ||
| IL_4UJC_293 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_136 | Isolated non-canonical cWW pair | ||
| IL_4UJC_332 | No text annotation | ||
| IL_4UJC_137 | No text annotation | ||
| IL_4UJC_138 | No text annotation | ||
| IL_4UJC_139 | Isolated non-canonical cWW pair | ||
| IL_4UJC_294 | Multiple bulged bases | ||
| IL_4UJC_295 | No text annotation | ||
| IL_4UJC_140 | No text annotation | ||
| IL_4UJC_141 | No text annotation | ||
| IL_4UJC_142 | Minor groove platform | ||
| IL_4UJC_143 | Single bulged G | ||
| IL_4UJC_144 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_145 | No text annotation | ||
| IL_4UJC_146 | Single bulged U | ||
| IL_4UJC_296 | No text annotation | ||
| IL_4UJC_147 | No text annotation | ||
| IL_4UJC_148 | No text annotation | ||
| IL_4UJC_149 | Single bulged U | ||
| IL_4UJC_150 | Double sheared; A in syn | ||
| IL_4UJC_297 | Isolated non-canonical cWW with bulges | ||
| IL_4UJC_151 | No text annotation | ||
| IL_4UJC_152 | Single bulged U | ||
| IL_4UJC_153 | Single stack bend with SAM intercalation | ||
| IL_4UJC_154 | Multiple bulged bases | ||
| IL_4UJC_155 | Minor groove platform related | ||
| IL_4UJC_298 | No text annotation | ||
| IL_4UJC_156 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4UJC_157 | Isolated cWH basepair | ||
| IL_4UJC_158 | Isolated non-canonical cWW pair | ||
| IL_4UJC_159 | No text annotation | ||
| IL_4UJC_160 | No text annotation | ||
| IL_4UJC_161 | No text annotation | ||
| IL_4UJC_299 | No text annotation | ||
| IL_4UJC_333 | No text annotation | ||
| IL_4UJC_162 | No text annotation | ||
| IL_4UJC_163 | No text annotation | ||
| IL_4UJC_164 | No text annotation | ||
| IL_4UJC_165 | No text annotation | ||
| IL_4UJC_166 | No text annotation | ||
| IL_4UJC_167 | No text annotation | ||
| IL_4UJC_334 | Isolated non-canonical cWW pair | ||
| IL_4UJC_168 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_169 | Stack and bulge | ||
| IL_4UJC_300 | No text annotation | ||
| IL_4UJC_170 | Triple sheared related | ||
| IL_4UJC_171 | No text annotation | ||
| IL_4UJC_172 | Minor groove platform | ||
| IL_4UJC_335 | No text annotation | ||
| IL_4UJC_173 | No text annotation | ||
| IL_4UJC_174 | No text annotation | ||
| IL_4UJC_175 | Multiple bulged bases | ||
| IL_4UJC_176 | No text annotation | ||
| IL_4UJC_301 | No text annotation | ||
| IL_4UJC_177 | No text annotation | ||
| IL_4UJC_178 | Isolated non-canonical cWW contact | ||
| IL_4UJC_179 | No text annotation | ||
| IL_4UJC_302 | No text annotation | ||
| IL_4UJC_180 | No text annotation | ||
| IL_4UJC_303 | No text annotation | ||
| IL_4UJC_181 | Kink-turn with non-sequential stacking | ||
| IL_4UJC_182 | No text annotation | ||
| IL_4UJC_183 | No text annotation | ||
| IL_4UJC_184 | Isolated cWH basepair | ||
| IL_4UJC_185 | Isolated near basepair | ||
| IL_4UJC_186 | Single bulged U | ||
| IL_4UJC_187 | C-loop | ||
| IL_4UJC_188 | Single bulged G | ||
| IL_4UJC_189 | Single bulged A | ||
| IL_4UJC_336 | No text annotation | ||
| IL_4UJC_190 | No text annotation | ||
| IL_4UJC_191 | No text annotation | ||
| IL_4UJC_192 | Isolated non-canonical cWW pair | ||
| IL_4UJC_193 | Kink-turn related | ||
| IL_4UJC_194 | Isolated cWH basepair | ||
| IL_4UJC_195 | Isolated non-canonical cWW pair | ||
| IL_4UJC_196 | tSH-tHW-tHS | ||
| IL_4UJC_197 | Multiple bulged bases | ||
| IL_4UJC_198 | No text annotation | ||
| IL_4UJC_199 | Major groove minor groove platform; mini C-loop | ||
| IL_4UJC_200 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_201 | No text annotation | ||
| IL_4UJC_202 | Isolated cWH basepair | ||
| IL_4UJC_203 | Major groove platform; stack outside cWW | ||
| IL_4UJC_304 | Isolated non-canonical cWW pair | ||
| IL_4UJC_337 | No text annotation | ||
| IL_4UJC_204 | Isolated non-canonical cWW pair | ||
| IL_4UJC_205 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_206 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_207 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_208 | Kink-turn related | ||
| IL_4UJC_338 | Kink-turn | ||
| IL_4UJC_209 | Other IL | ||
| IL_4UJC_210 | tSH-tHW-tHS | ||
| IL_4UJC_211 | No text annotation | ||
| IL_4UJC_212 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_213 | Isolated non-canonical cWW contact | ||
| IL_4UJC_214 | Single bulged U | ||
| IL_4UJC_215 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4UJC_305 | No text annotation | ||
| IL_4UJC_216 | No text annotation | ||
| IL_4UJC_339 | Single bulged G | ||
| IL_4UJC_217 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_306 | No text annotation | ||
| IL_4UJC_218 | No text annotation | ||
| IL_4UJC_307 | No text annotation | ||
| IL_4UJC_219 | Isolated non-canonical cWW pair | ||
| IL_4UJC_220 | Minor groove platform | ||
| IL_4UJC_221 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_308 | Isolated non-canonical cWW pair | ||
| IL_4UJC_309 | No text annotation | ||
| IL_4UJC_340 | No text annotation | ||
| IL_4UJC_222 | No text annotation | ||
| IL_4UJC_310 | No text annotation | ||
| IL_4UJC_223 | No text annotation | ||
| IL_4UJC_224 | Single bulged U | ||
| IL_4UJC_225 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_311 | Multiple bulged bases | ||
| IL_4UJC_227 | Single bulged A | ||
| IL_4UJC_228 | Isolated cWH basepair | ||
| IL_4UJC_229 | Isolated non-canonical cWW contact | ||
| IL_4UJC_230 | No text annotation | ||
| IL_4UJC_312 | No text annotation | ||
| IL_4UJC_231 | No text annotation | ||
| IL_4UJC_232 | No text annotation | ||
| IL_4UJC_313 | No text annotation | ||
| IL_4UJC_233 | No text annotation | ||
| IL_4UJC_234 | Isolated non-canonical cWW pair | ||
| IL_4UJC_314 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_315 | No text annotation | ||
| IL_4UJC_235 | No text annotation | ||
| IL_4UJC_236 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_341 | Isolated non-canonical cWW pair | ||
| IL_4UJC_237 | No text annotation | ||
| IL_4UJC_238 | No text annotation | ||
| IL_4UJC_239 | No text annotation | ||
| IL_4UJC_240 | Isolated non-canonical cWW pair | ||
| IL_4UJC_241 | Non canonical cWW and near pair | ||
| IL_4UJC_242 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_316 | Isolated non-canonical cWW pair | ||
| IL_4UJC_243 | Double sheared | ||
| IL_4UJC_244 | No text annotation | ||
| IL_4UJC_245 | Isolated non-canonical cWW pair | ||
| IL_4UJC_246 | Double sheared | ||
| IL_4UJC_247 | Tandem non-canonical cWW pairs | ||
| IL_4UJC_317 | Triple sheared | ||
| IL_4UJC_248 | No text annotation | ||
| IL_4UJC_318 | Partly complementary | ||
| IL_4UJC_249 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4UJC_028 | No text annotation | ||
| J3_4UJC_001 | No text annotation | ||
| J3_4UJC_050 | No text annotation | ||
| J3_4UJC_029 | No text annotation | ||
| J3_4UJC_051 | No text annotation | ||
| J3_4UJC_030 | No text annotation | ||
| J3_4UJC_052 | No text annotation | ||
| J3_4UJC_031 | No text annotation | ||
| J3_4UJC_032 | No text annotation | ||
| J3_4UJC_053 | No text annotation | ||
| J3_4UJC_033 | No text annotation | ||
| J3_4UJC_002 | No text annotation | ||
| J3_4UJC_003 | No text annotation | ||
| J3_4UJC_034 | No text annotation | ||
| J3_4UJC_054 | No text annotation | ||
| J3_4UJC_004 | No text annotation | ||
| J3_4UJC_055 | No text annotation | ||
| J3_4UJC_035 | No text annotation | ||
| J3_4UJC_005 | No text annotation | ||
| J3_4UJC_006 | No text annotation | ||
| J3_4UJC_056 | No text annotation | ||
| J3_4UJC_036 | No text annotation | ||
| J3_4UJC_007 | No text annotation | ||
| J3_4UJC_008 | No text annotation | ||
| J3_4UJC_037 | No text annotation | ||
| J3_4UJC_057 | No text annotation | ||
| J3_4UJC_038 | No text annotation | ||
| J3_4UJC_058 | No text annotation | ||
| J3_4UJC_039 | No text annotation | ||
| J3_4UJC_009 | No text annotation | ||
| J3_4UJC_010 | No text annotation | ||
| J3_4UJC_040 | No text annotation | ||
| J3_4UJC_059 | No text annotation | ||
| J3_4UJC_011 | No text annotation | ||
| J3_4UJC_041 | No text annotation | ||
| J3_4UJC_042 | No text annotation | ||
| J3_4UJC_012 | No text annotation | ||
| J3_4UJC_043 | No text annotation | ||
| J3_4UJC_013 | No text annotation | ||
| J3_4UJC_044 | No text annotation | ||
| J3_4UJC_014 | No text annotation | ||
| J3_4UJC_045 | No text annotation | ||
| J3_4UJC_015 | No text annotation | ||
| J3_4UJC_016 | No text annotation | ||
| J3_4UJC_060 | No text annotation | ||
| J3_4UJC_017 | No text annotation | ||
| J3_4UJC_018 | No text annotation | ||
| J3_4UJC_019 | No text annotation | ||
| J3_4UJC_020 | No text annotation | ||
| J3_4UJC_046 | No text annotation | ||
| J3_4UJC_021 | No text annotation | ||
| J3_4UJC_047 | No text annotation | ||
| J3_4UJC_022 | No text annotation | ||
| J3_4UJC_023 | No text annotation | ||
| J3_4UJC_024 | No text annotation | ||
| J3_4UJC_025 | No text annotation | ||
| J3_4UJC_026 | No text annotation | ||
| J3_4UJC_048 | No text annotation | ||
| J3_4UJC_027 | No text annotation | ||
| J3_4UJC_049 | No text annotation | ||
| J4_4UJC_001 | No text annotation | ||
| J4_4UJC_016 | No text annotation | ||
| J4_4UJC_002 | No text annotation | ||
| J4_4UJC_003 | No text annotation | ||
| J4_4UJC_004 | No text annotation | ||
| J4_4UJC_017 | No text annotation | ||
| J4_4UJC_005 | No text annotation | ||
| J4_4UJC_006 | No text annotation | ||
| J4_4UJC_007 | No text annotation | ||
| J4_4UJC_008 | No text annotation | ||
| J4_4UJC_009 | No text annotation | ||
| J4_4UJC_010 | No text annotation | ||
| J4_4UJC_011 | No text annotation | ||
| J4_4UJC_012 | No text annotation | ||
| J4_4UJC_013 | No text annotation | ||
| J4_4UJC_014 | No text annotation | ||
| J4_4UJC_015 | No text annotation | ||
| J5_4UJC_001 | No text annotation | ||
| J5_4UJC_002 | No text annotation | ||
| J5_4UJC_003 | No text annotation | ||
| J5_4UJC_008 | No text annotation | ||
| J5_4UJC_004 | No text annotation | ||
| J5_4UJC_005 | No text annotation | ||
| J5_4UJC_006 | No text annotation | ||
| J5_4UJC_009 | No text annotation | ||
| J5_4UJC_007 | No text annotation | ||
| J6_4UJC_005 | No text annotation | ||
| J6_4UJC_001 | No text annotation | ||
| J6_4UJC_006 | No text annotation | ||
| J6_4UJC_002 | No text annotation | ||
| J6_4UJC_007 | No text annotation | ||
| J6_4UJC_003 | No text annotation | ||
| J6_4UJC_008 | No text annotation | ||
| J6_4UJC_004 | No text annotation | ||
| J7_4UJC_001 | No text annotation | ||
| J9_4UJC_002 | No text annotation | ||
| J9_4UJC_001 | No text annotation |
Coloring options: