HL_4UJC_011

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_011 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.3718

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4UJC|1|A2|U|384
4UJC|1|A2|G|385
4UJC|1|A2|A|386
4UJC|1|A2|A|387
4UJC|1|A2|G|388
4UJC|1|A2|A|389

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BP

60S RIBOSOMAL PROTEIN L17