HL_4UJC_019

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGCCGCGCCG

Length

10 nucleotides

Bulged bases

4UJC|1|A2|C|1462

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_019 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2644

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

4UJC|1|A2|C|1457
4UJC|1|A2|G|1458
4UJC|1|A2|C|1459
4UJC|1|A2|C|1460
4UJC|1|A2|G|1461
4UJC|1|A2|C|1462
4UJC|1|A2|G|1463
4UJC|1|A2|C|1464
4UJC|1|A2|C|1465
4UJC|1|A2|G|1466

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13

Chain Ba

60S RIBOSOMAL PROTEIN L27A