HL_4UJC_025

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

4UJC|1|A2|G|1800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_025 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3032

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

4UJC|1|A2|C|1795
4UJC|1|A2|U|1796
4UJC|1|A2|G|1797
4UJC|1|A2|G|1798
4UJC|1|A2|C|1799
4UJC|1|A2|G|1800
4UJC|1|A2|U|1801
4UJC|1|A2|G|1802

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BT

60S RIBOSOMAL PROTEIN L21

Chain Bb

60S RIBOSOMAL PROTEIN L29