HL_4UJC_028

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UAUAGACAGCACUGCCGAA

Length

19 nucleotides

Bulged bases

4UJC|1|A2|A|1938

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|U|1935
4UJC|1|A2|A|1936
4UJC|1|A2|U|1937
4UJC|1|A2|A|1938
4UJC|1|A2|G|1939
4UJC|1|A2|A|1940
4UJC|1|A2|C|1941
4UJC|1|A2|A|1942
4UJC|1|A2|G|1943
4UJC|1|A2|C|1944
4UJC|1|A2|A|1945
4UJC|1|A2|C|1997
4UJC|1|A2|U|1998
4UJC|1|A2|G|1999
4UJC|1|A2|C|2000
4UJC|1|A2|C|2001
4UJC|1|A2|G|2002
4UJC|1|A2|A|2003
4UJC|1|A2|A|2004

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BS

60S RIBOSOMAL PROTEIN L18A

Chain Bm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40