HL_4UJC_033

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_033 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1846

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJC|1|A2|C|2435
4UJC|1|A2|G|2436
4UJC|1|A2|A|2437
4UJC|1|A2|G|2438
4UJC|1|A2|C|2439
4UJC|1|A2|G|2440

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BN

60S RIBOSOMAL PROTEIN L15

Chain Bj

60S RIBOSOMAL PROTEIN L37