HL_4UJC_035

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

4UJC|1|A2|U|2507, 4UJC|1|A2|C|2508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.2229

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4UJC|1|A2|G|2500
4UJC|1|A2|U|2501
4UJC|1|A2|U|2502
4UJC|1|A2|C|2503
4UJC|1|A2|A|2504
4UJC|1|A2|G|2505
4UJC|1|A2|A|2506
4UJC|1|A2|U|2507
4UJC|1|A2|C|2508
4UJC|1|A2|C|2509

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19

Chain BX

60S RIBOSOMAL PROTEIN L23A

Chain Bg

60S RIBOSOMAL PROTEIN L34