HL_4UJC_045

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCUGGGUGCAGC

Length

12 nucleotides

Bulged bases

4UJC|1|A2|G|2880, 4UJC|1|A2|U|2881

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|2875
4UJC|1|A2|C|2876
4UJC|1|A2|U|2877
4UJC|1|A2|G|2878
4UJC|1|A2|G|2879
4UJC|1|A2|G|2880
4UJC|1|A2|U|2881
4UJC|1|A2|G|3566
4UJC|1|A2|C|3567
4UJC|1|A2|A|3568
4UJC|1|A2|G|3569
4UJC|1|A2|C|3570

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19

Chain CI

40S RIBOSOMAL PROTEIN ES8

Chain CL

40S RIBOSOMAL PROTEIN US17