HL_4UJC_049

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_049 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.2469

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJC|1|A2|A|3693
4UJC|1|A2|G|3694
4UJC|1|A2|A|3695
4UJC|1|A2|A|3696
4UJC|1|A2|A|3697
4UJC|1|A2|U|3698

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain Bi

60S RIBOSOMAL PROTEIN L36

Chain Bo

60S RIBOSOMAL PROTEIN L36A

Chain Bu

60S RIBOSOMAL PROTEIN L10A