HL_4UJC_052

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

4UJC|1|A2|A|3845, 4UJC|1|A2|A|3846, 4UJC|1|A2|C|3847

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_052 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1709

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4UJC|1|A2|G|3842
4UJC|1|A2|G|3843
4UJC|1|A2|G|3844
4UJC|1|A2|A|3845
4UJC|1|A2|A|3846
4UJC|1|A2|C|3847
4UJC|1|A2|G|3848
4UJC|1|A2|G|3849
4UJC|1|A2|G|3850
4UJC|1|A2|C|3851

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain Be

60S RIBOSOMAL PROTEIN L32

Chain Bf

60S RIBOSOMAL PROTEIN L35A