HL_4UJC_057

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_057 not in the Motif Atlas

Homologous match to HL_5TBW_056

Geometric discrepancy: 0.2122

The information below is about HL_5TBW_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4UJC|1|A2|G|4210
4UJC|1|A2|A|4211
4UJC|1|A2|C|4212
4UJC|1|A2|A|4213
4UJC|1|A2|G|4214
4UJC|1|A2|A|4215
4UJC|1|A2|A|4216
4UJC|1|A2|A|4217
4UJC|1|A2|C|4218

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BJ

60S RIBOSOMAL PROTEIN L11