HL_4UJC_059

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

4UJC|1|A2|C|4263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|U|4261
4UJC|1|A2|U|4262
4UJC|1|A2|C|4263
4UJC|1|A2|A|4264
4UJC|1|A2|G|4265
4UJC|1|A2|U|4266
4UJC|1|A2|A|4267
4UJC|1|A2|C|4268
4UJC|1|A2|G|4269

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BQ

60S RIBOSOMAL PROTEIN L18

Chain BT

60S RIBOSOMAL PROTEIN L21

Chain Ba

60S RIBOSOMAL PROTEIN L27A

Chain Bb

60S RIBOSOMAL PROTEIN L29

Chain Bo

60S RIBOSOMAL PROTEIN L36A