HL_4UJC_070

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

4UJC|1|A2|U|4931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_070 not in the Motif Atlas

Homologous match to HL_5TBW_070

Geometric discrepancy: 0.1324

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

4UJC|1|A2|G|4930
4UJC|1|A2|U|4931
4UJC|1|A2|A|4932
4UJC|1|A2|G|4933
4UJC|1|A2|A|4934
4UJC|1|A2|C|4935
4UJC|1|A2|G|4936
4UJC|1|A2|A|4937
4UJC|1|A2|C|4938

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BP

60S RIBOSOMAL PROTEIN L17

Chain Bd

60S RIBOSOMAL PROTEIN L31