3D structure

PDB id
4UJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
CUGAUAGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4UJC|1|AC|C|293
4UJC|1|AC|U|294
4UJC|1|AC|G|295
4UJC|1|AC|A|296
4UJC|1|AC|U|297
4UJC|1|AC|A|298
4UJC|1|AC|G|299
4UJC|1|AC|G|300

Current chains

Chain AC
HCV-IRES

Nearby chains

Chain C1
Small subunit ribosomal RNA; SSU rRNA
Chain CB
40S RIBOSOMAL PROTEIN ES1

Coloring options:

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