HL_4UJC_099

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

4UJC|1|C1|U|541, 4UJC|1|C1|C|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_099 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3984

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4UJC|1|C1|C|539
4UJC|1|C1|U|540
4UJC|1|C1|U|541
4UJC|1|C1|U|542
4UJC|1|C1|C|543
4UJC|1|C1|G|544

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains