HL_4UJC_104
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CUAUUUUGUUGGUUUUCGG
- Length
- 19 nucleotides
- Bulged bases
- 4UJC|1|C1|A|886
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJC_104 not in the Motif Atlas
- Homologous match to HL_8P9A_208
- Geometric discrepancy: 0.5337
- The information below is about HL_8P9A_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|C1|C|884
4UJC|1|C1|U|885
4UJC|1|C1|A|886
4UJC|1|C1|U|887
4UJC|1|C1|U|888
4UJC|1|C1|U|889
4UJC|1|C1|U|890
4UJC|1|C1|G|891
4UJC|1|C1|U|892
4UJC|1|C1|U|893
4UJC|1|C1|G|894
4UJC|1|C1|G|895
4UJC|1|C1|U|896
4UJC|1|C1|U|897
4UJC|1|C1|U|898
4UJC|1|C1|U|899
4UJC|1|C1|C|900
4UJC|1|C1|G|901
4UJC|1|C1|G|902
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CG
- 40S RIBOSOMAL PROTEIN ES6
- Chain CI
- 40S RIBOSOMAL PROTEIN ES8
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
Coloring options: