HL_4UJC_113

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_113 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.2677

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJC|1|C1|A|1353
4UJC|1|C1|G|1354
4UJC|1|C1|C|1355
4UJC|1|C1|G|1356
4UJC|1|C1|A|1357
4UJC|1|C1|U|1358

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CA

40S RIBOSOMAL PROTEIN US2

Chain CC

40S RIBOSOMAL PROTEIN US5