HL_4UJC_115

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GAGCGGUC

Length

8 nucleotides

Bulged bases

4UJC|1|C1|C|1423, 4UJC|1|C1|G|1424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|C1|G|1420
4UJC|1|C1|A|1421
4UJC|1|C1|G|1422
4UJC|1|C1|C|1423
4UJC|1|C1|G|1424
4UJC|1|C1|G|1425
4UJC|1|C1|U|1426
4UJC|1|C1|C|1427

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CQ

40S RIBOSOMAL PROTEIN US9

Chain CT

40S RIBOSOMAL PROTEIN ES19