HL_4UJC_118
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 4UJC|1|C1|A|1623
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJC_118 not in the Motif Atlas
- Homologous match to HL_8P9A_222
- Geometric discrepancy: 0.5384
- The information below is about HL_8P9A_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4UJC|1|C1|A|1614
4UJC|1|C1|U|1615
4UJC|1|C1|U|1616
4UJC|1|C1|G|1617
4UJC|1|C1|C|1618
4UJC|1|C1|A|1619
4UJC|1|C1|A|1620
4UJC|1|C1|U|1621
4UJC|1|C1|U|1622
4UJC|1|C1|A|1623
4UJC|1|C1|U|1624
4UJC|1|C1|U|1625
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CP
- 40S RIBOSOMAL PROTEIN US19
- Chain CS
- 40S RIBOSOMAL PROTEIN US13
- Chain CT
- 40S RIBOSOMAL PROTEIN ES19
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
Coloring options: