HL_4UJC_119
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 4UJC|1|C1|G|1665
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJC_119 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.3242
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4UJC|1|C1|G|1658
4UJC|1|C1|U|1659
4UJC|1|C1|C|1660
4UJC|1|C1|A|1661
4UJC|1|C1|U|1662
4UJC|1|C1|A|1663
4UJC|1|C1|A|1664
4UJC|1|C1|G|1665
4UJC|1|C1|C|1666
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CQ
- 40S RIBOSOMAL PROTEIN US9
- Chain CS
- 40S RIBOSOMAL PROTEIN US13
- Chain CT
- 40S RIBOSOMAL PROTEIN ES19
- Chain CU
- 40S RIBOSOMAL PROTEIN US10
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
Coloring options: