HL_4UJC_126

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_126 not in the Motif Atlas

Homologous match to HL_8P9A_170

Geometric discrepancy: 0.184

The information below is about HL_8P9A_170

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4UJC|1|A2|U|4281
4UJC|1|A2|G|4282
4UJC|1|A2|A|4283
4UJC|1|A2|A|4284
4UJC|1|A2|A|4285
4UJC|1|A2|G|4286

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BT

60S RIBOSOMAL PROTEIN L21