HL_4UJD_002

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UAACCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_002 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.3217

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4UJD|1|A2|U|68
4UJD|1|A2|A|69
4UJD|1|A2|A|70
4UJD|1|A2|C|71
4UJD|1|A2|C|72
4UJD|1|A2|A|73

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AL

60S RIBOSOMAL PROTEIN L13

Chain AN

60S RIBOSOMAL PROTEIN L15

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ai

60S RIBOSOMAL PROTEIN L36